RNA id: XM_007256662.3


Basic Information

Item Value
RNA id XM_007256662.3
length 4075
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC103033873
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60163340 ~ 60177354 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGAGCCCACATAGAGAGTAGTAGTAGCGGAGCCTCAGTGAGCAGCATTAGACTGTAGCACTTAACTCTCTTTGTGCCGGGGAGAACCCCACCGCAGGAATACACACAGATGTTCTGACCTTCAGGACCACGGAGGGGCGACCTCTTGAACTCGGCTGTACAAGAGACATAGCGGAGACGTGTTAGCGGGTGTTTTTGGTCGCGTTTAGCTCGGTTTGTTGGTGTTTTTCGGGGAGGACAGGTGGCCACGTCCTtcatcctctctctttctcgggTCTGGAACTAGCGTTAGCCGCTAGCCGCTGTTTTGTTGCGCCGGCGCTTcgggaaaaaaaaaccttacacACTAGGAGGTTTCACCCAGGAATGGATACTGGAGTCGCCACTGAAAAGAAAAGGGTGAGCTCAGAGCGCAGGAAGGAGAAGTCCAGGGATGCTGCTCGATGCCGCAGGGGGAAGGAGTCTGAGGTGTTCTTCGAACTAGCAAATCAGCTGCCTCTGCCCCACAATGTCACCTCCCACCTGGACAAGGCCTCCATCATGAGGCTGACCATTAGCTACCTGCGCATGAGAAAACTTCTGAGCTCTGgtgatgCAGAGAAAGAGTCTGAGCTGGAGAGTCAGCTCAATGGCTTCTACTTAAAGGCATTGGAGGGCTTCCTTATGGTGCTTTCTGAGGATGGGGATATGGTCTATCTCTCAGAAAATGTCTGCAAATGCATGGGCCTTACACAGtttgATCTGACTGGCCACAGTGTTTTTGACTTTGCACACCCTTGTGATCATGAGGAAATGAGGGAAATGCTGGTGCACAGGACAGGGTCCAAGAAAACCAAGGAGCAAAACACAGAAAGAAGCTTCTTCCTGCGCATGAAGTGCACACTCACTAGCAGAGGACGTACTGTCAACATAAAATCTGCCACATGGAAGGTCCTCCACTGCACAGGGCATGTGCGTGTTCAGGAATCTGGTGAGGGTTCTGCAGACAGTAGCTTCAGAGAGCCTCCCATTACTTATCTGGTGTTAATTTGTGAGCCCATCCCCCATCCCTCCAACATAGAGGTGCCTCTGGACAGCAAAACTTTCCTAAGCCGTCACACCCTGGACATGAAGTTCTCATATTGCGATGAGAGAATCACAGAGCTGATGGGCCACGAGCCAGATGACTTGCTTAATAGGTCTGTGTATGAGTACTACCATGCTCTAGACTCTGATCACCTAACCAAGACACATCATAATTtgttcGCAAAGGGCCAGGCTACAACAGGCCAGTATCGAATGCTGGCTAAGAAGGGAGGCTATGTGTGGGTTGAGACCCAGGCGACAGTAATTTATAATCCCAAAAACTCCCAGCcacagtgtattgtgtgtgtcaACTATGTTCTCAGTGGCATTGTGGAGGGAGATATGATCCTCTCCCTAGAGCAGACAGTGACTGAGCCAAAGGCTgtggagaaggaggagaaaCAAAAGGACAAAGAAGAGGAAACTGAGGTGGACATGGATTCCTTCAAGCAGGAGAAGCTGACATGTTCTGTGGAGAGTCCAGAGAGCCTCTACGAGAAACTGAAGGAGGAGCCTGAGGCACTTACAGTGCTGGCTCCTGCTGCAGGAGACACCATCATCTCACTGGACTTTAACAGCTCTGAGTCTGAGATGCAGTTGCTGAAGGAAGTGCCCCTCTACAATGATGTCATGCTGCCCTCTACCAGTGAGAAACTTCCTCTGCCCCTGTCTCCACTGGCTCCAAGTGAGCCCCCTCCAGCTTTGGACAAACTAGAGACTGGAGGAGAGGAATTCGCATTTCCTTCTACTTCTCACCGCAGTGCAGATGCTGCAAACACTCCTTCCACACCATCTACTGGGTCCAGCACTTCGGCGCCCAACAGTCCAATAGATTACTGTTTCCAAGTTGATTCAGACATTGGTTCAGAGTTCAAACTGGATTTGGTTGAAAAATTGTTTGCTATTGACACTGAGGCCAAGACCCCATACAGCACTCAAgataTGGGTGATCTCGACCTGGAGATGCTTGCTCCCTATATTCCAATGGACGATGACTTCCAGCTGCTCATCCCCTCTCCGCTGGACCCCCTCCCCTCTGGACCCCACACAGTCTCAGACATGAGCTCCCTGTTCCAGCCCTTACCCACTCCTTCAACTACAGCTTCTAGCCCTAGCAGCTCTGTATCTCAGGAGTCCTCTTCCCGTGTTCCCTCACCCCTTCACATGCTGCAGGAGGTACGCAGCGCCCCTGTCTCACCCTTCAGTGGTAATCGAAGTCGTGAGGCCTCCCCAGCTCGTGCACCCACCCCACAGGGGAGCAGGACCCTTACAACAGGGATGTCTGCGGTGGATCGAGAGCTGTCACCAAAGGTGTTAGCCATCCAGAATGCCCAGCGCAAGAGGAAACTGGAAGAGGTTACCTCACTGTCCCAGGCTGTTGGGCTGGGTGCTTTGCTCCAGTCTGTGGATGATGCAATAGAACCAGGAAAAAGAGCCAAAGTACTGGAGGTTAAAGGCTCTAGTTTGCTTGGTGGGAACAAGACCATTCTTATACTGCCATCTGATGTGGCCAGTCGGTTGTTGTGCAGCTCGTTTGAAAGCAGTGGAGGGTTACCTCGGCTGACGCGCTACGACTGTGAGGTCAACGCTCCCGTTCAGGACCTCCATCCTTTGCTACAGGGGGAAGAGCTACTGCGTGCTCTGGACCAAGTTAACTGAGCTATGCTCTGCTTTACAATACTGGACACTGCATCCCCTCTACCTTTTACCCATTGTCACCTTCTAAAGTAGAAGAACGAAGGCCCCGTCAGCCTTCAGTCCCTGGCATCTGACATTTTCGTAATATGTATTTTCCACAGCTTGTTGATTTGCTCTCTGCCAACTTGATCCTACATGTTTCATAGTTCAGAGGGCTTCCCTCCCACTAGTGGCCTGGTGGACAAActttgattttaatatttaagtattaGAGGTAGTTTTCTCTCTTGCGAGTGGAGACAAAGAAGTATAATCTAAAATAGTGGTGGAGACCAGTAGAGACTAAAGAGCCTTAATGCTAAACGCACAGTCCCCTCAACATAAATGCTTACTTGTCCCACCCCCTCTGGATCCCATTTATTGCTGCAGAACTCTTTCCTTATTTGTGCTCTCCTTTTCCCGCCCCCTTCCTAAGCAGTGTGTATTGTAGCTAAAGTCGCACAATGATCTATTTTCTTAAGACAGAATACCAGCAGTTCATGCAATATACAAAACcatttttacaaatatgtaCTTTTAACTAAAAGAATAACCATgttatttttctgtctgttgCTTTTCCTCATTTATCTTATTTGTTTGAAAACGGTAACATTAAAGagttgtatgtgtgtttattcatagGCTACATGGTGTATGCTTACATTCTTATTGCTGTGGACATATTTACATCATAGATCACCAGTTCATCATAGAATGGCACAGATGAATTGTAAAGGCACCATTGAAAGTAATCTTTGTGAATGTGCAAAAGGGAATTTTCAAATGAGATTTTTGGCATTTCTGGTGAAATGCAAATGTCCAGGCGTTGGTTTTTATCATGATAAGGCTTAAACAGATGTAGAGTTTAATGACGTgatagatttttatattttattagtcaTTGTTTCTGTGTATCTTCATTGTAGATGCTGAGTAGTCTTTCTTGCCTGTCCATTGTCATACGGCAGCATAGATTTTAATATTATGCTTAAAAAGCACATCATATAGTGATCATGCAAAGCTGGCTTATCAGTTATTCATGATTTAAGTGTACAATGgcatctatatataaatataaatatatatataatgcaatgCTTAGAATAGGCATAAACAAAAAGGCAATATTTGTTTTCTTCATGCTTTCTCAACAGTGacttgcaaatattttattaccttTTATCTTATTTTGCATAGAAAAATTGTTCCTTTCTGGTTGTCATATTGTATTCTATCGTTCATTTATTTCTGCAGTCTGTACGCCTGTATTCCCTCAACactaaatgtattgtttattgcatAATCATTAAAGAACAATTGTGGACCAGGC

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001666 response to hypoxia biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K08268 HIF1A; hypoxia-inducible factor 1 alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39706 lncRNA downstream 71581 60074072 ~ 60091759 (-) True G29608
TU39646 lncRNA downstream 305001 59858066 ~ 59858339 (-) True G29563
TU39642 lncRNA downstream 310872 59852055 ~ 59852468 (-) True G29559
TU39584 lncRNA downstream 555494 59607175 ~ 59607846 (-) True G29509
TU39571 lncRNA downstream 584945 59576259 ~ 59578395 (-) False LOC111190079
TU39772 lncRNA upstream 173919 60351273 ~ 60352884 (-) False LOC103035785
TU39775 lncRNA upstream 178115 60355469 ~ 60355877 (-) False LOC103035785
TU39787 lncRNA upstream 206649 60384003 ~ 60384462 (-) True G29681
TU39791 lncRNA upstream 210626 60387980 ~ 60388361 (-) True G29684
TU39815 lncRNA upstream 218295 60395649 ~ 60396246 (-) True G29702
XM_022663912.1 mRNA downstream 1274 60149397 ~ 60162066 (-) True LOC103034188
XM_007256661.3 mRNA downstream 17420 60128047 ~ 60145920 (-) True LOC103033561
XM_007256660.3 mRNA downstream 39862 60097488 ~ 60123478 (-) False LOC103032801
XM_007256659.3 mRNA downstream 45778 60097488 ~ 60117562 (-) True LOC103032801
XM_007256657.2 mRNA downstream 103740 59882140 ~ 60059600 (-) True LOC103032183
XM_007256664.3 mRNA upstream 7340 60184694 ~ 60219056 (-) True LOC103034514
XM_007256667.3 mRNA upstream 130581 60307935 ~ 60311646 (-) True LOC103035477
XM_007256668.3 mRNA upstream 173918 60351272 ~ 60364743 (-) True LOC103035785
XM_022663936.1 mRNA upstream 177846 60355200 ~ 60364744 (-) False LOC103035785
XM_007230924.3 mRNA upstream 425056 60602410 ~ 60607157 (-) True LOC103027016
TU39714 other downstream 1316 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 725042 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 1228551 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 1988636 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 3469215 56646027 ~ 56694125 (-) False LOC103031416
XR_002649735.1 other upstream 191692 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 1656094 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 3032927 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 3032927 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 3032927 63210281 ~ 63231566 (-) False fryl

Expression Profile