RNA id: XM_007256666.3


Basic Information

Item Value
RNA id XM_007256666.3
length 3109
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC103035162
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60265837 ~ 60273289 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCGGACCCCCTTCCCGCGTGCGGCTGCGGAGTCAAACTCGCGCCGGACGTGGAGAAGCGAGCGCTCGGGCCAGTGCGCGCGGCGGGGCCGGAATGATGAACCCGATCGCGCTCGGAATGGCGGGGTGAAACCCGATCGCGAGACCCCGGAGGAGTGACCGAGTGAGACTTAGCTGCTGCTACCTTACCAGCACGTGTGCCCTTCAGGAGTGAGAAGAAGGAGGGggcacaacaacaacaacaaaaaaaagaaaaaaaaagaagacaagacATGGCTTCCTCTTCCAGCGAGCTCATCAGCGCCGACGAGATCAAGAGGGAGAGCCCGAGGACGACGCTGGACGAGCTCGCGCCGCTGCCGCCGAGCGCGGAGGAGAGCCTGTCCGCCGCGTCCTGCGTGTCCTCGCCGCTCGCCTTCTCGCCCGAGCAGGTGGCGTGCGTGTGCGAGGCGCTGCTGCAGGGCGGAGACGTAGAGCGGCTCGCGCGGTTCCTGTGGTCGCTGCCGCAGAGCGAGCTGCTGCGCGGAAACGAGAGCATCCTGAAGGCGCAGGCCATCGTGGCCTTCCACCAAGCGCGGTACCAAGAACTTTACTGCATCCTGGAGAGCCACAGCTTCAGCCCGGCCAACCACTCTTCCCTGCAGGACATGTGGTACAAGGCGCGCTACAGCGAGGCGGAGAAGGCGCGCGGGAGGCCGCTGGGCGCTGTGGACAAGTACCGCTTGCGCAGGAAGTACCCGCTGCCCAGGACCATCTGGGACGGCGAGGAGACCGTGTACTGCTTCAAGGAGAAGTCGCGCAACGCGCTCAAGGACATGTACAAGAGGAACCGCTACCCGTCCCCGGCCGAGAAGAGGAACCTGGCCAAGATCACGGGCCTCTCGCTGACCCAGGTTAGCAACTGGTTTAAAAACAGGAGGCAGAGGGACAGGAACCCGTCCGAGGCGCAGTCCAAAAGTGAATCGGATGGCAATCACAGCACAGAGGATGAGTCAAGTAAAGGTCAAGAGGACCTGTCCCCTCGTCCCCTCTCCAGTGGCTCCACTGGCTCAACCACCCATGGGTCTAGCCCTGCTGTTATGTACTCTGATGGCACCACCACTGTCATTCAGCAAATCGGTGATGTCAAAATGTCCCCGCTTTCCGCAGGGATGGGCTACAATGGTGAGCTGTCGACCACCAACTCTCACTATATCAATGGTGGAGCTTATGTTCAATCACATGGCAACAGCAATATCCTGAATGGACTTGGAGCCACAGGTGGCCACTTCTTGACCTTCGATCCCCAGAGGGTCTCCCATGCCCAAGAAAGGCTACTAAGTGGCTCCTCTGTGTCCTACTCATCTTATTCAATGGAAAATCCAGAAGCCACAATTGGAAAACTGGATGGAATGCAACCTCTGGTCTCCCATTCAGATGACGGAGCCACACCTACAGTAGTCACCTTCGCCACCacctcttcctcatcctcctctaCCTCTGGAGCTCCTCATCTCAGCAGCTACAGCATGGTCAATCTTTCTGGGGTTGAGAATCTTGGTCTTCCTCCATTATTGCTACCTCCATCCTCTACAGCCCCCTCTCATGGCTCTGCTCCGCTGGATGGCGTGGTCAGCGACTCATCCCATCATTCAGGCCAGCCCCTGCTTTACACTCTCAACCAGGCAGTCAAGCAGGAGCCGTTGGACATTGGCGTGGGCTACACGTATCCCTCCACCATGGCCTTAGATCAAACTGGCAACCTAGGCTAcactgcctctctctttctatcctcAAACCTTGGACCCACGCCCGACAATGGCAGCCCCCTTGCCCCTGCTGCCACGGCCGCCGTCACCTCCGTCCTGTCCAGCACAGAGGGTCACTCCACTCTGACTCACGCTGCCCGTGGTCTCCTGGAGGGTGGGAGCACCCTGCCCTCAAACTATACAACCCATGATGCTCAGCTGCCCCTGTCCAACAACCTGGAGTCCCCTGCAGGACATGGAGAGGGGTCAGTGTGCAGGGATCTGGACATGGAAGGGAAAGAGCTTGCCAAGTTGCAGACTGTGCAGATGGACACAGACAATGACCTCTGACCCCTGTGATCATATCACCTGAAGAGCTGTGTTTCATGAGTGTTTGGTTGGTTTTCTTGCACCCCACTGTGACCTCTTATGAGGTCTCTTATGCACACGTCAGACTCCAGCTCAGATTCCACATTGCTTCCTGGATAACGTATGCAAGATGTGTACAAATGGGTGAACTAAACAAGCAGTGCCTTTTTGTCCCCAGAAATGTAGCCCACAATATCTAGCCGACTTGCACTCGGAAGGGCTGCAGAATGTACTTGCTAATGCACTGACCTTACAAAGATTATGTCTGAGCACTGTCATTTCTCTCTTACAGTAAGAGAGACTTTagtcaggagagagagagagagtgaaagatgCAGAAAAGAAGTGTAAAGAAAAGAGgcaaagaagaaaaagactTGTGAAAAGTAAAACAAGATGACAGATATTGGCAAATGTCTGCACAATCACTGCAGCTTTATATCAGTCCTTTTATGTTCCTCTTCAATATTTTATGAAAGCACAGATGTTTAATTTTTGTTGATGTTGTTGTTtggtcttttttatttaatgtttgagtGTGAAATAGTAATGTGAATGATGTTTTGTTATGATTTGCTTTTTAAATTTCAGTTCGACAACAGCTTTTGAATTTAAACACACCTTGTGTCCTTCTTGATAACAGAACATTGTATTTTTGGGCATTTAACTATTGCTACTGTGCCTTCCTTAAAGAAGTTGAATCTCTGCACAAGGAActtatttaagaaaattaagTGTTGGACAAATATGCTTCAGTTTTGCATTTCACTATTGCTTTACCATGtgaaaaaacaaggaaaactaACTAAAAGGCATTATAGTGCATTCAATTATCTTCTTCACTGATGAATAGGAACCTTCATGTATAGGATAATGAGATAGTTAGCAAACAGGAATTCTGCACATGCTGTAAATAATGACAAGTCCTAAACCTTTCTGCATTAAGAAATGAAAACAGCAtatttttctaaacttttaccccattaaattgttttatatttatacatgtaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15615 SIX4; homeobox protein SIX4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39688 lncRNA upstream 88493 60165466 ~ 60177344 (+) True G29596
TU39690 lncRNA upstream 88493 60166102 ~ 60177344 (+) False G29596
TU39683 lncRNA upstream 103680 60157270 ~ 60162157 (+) True G29594
TU39679 lncRNA upstream 134363 60128061 ~ 60131474 (+) True G29591
TU39665 lncRNA upstream 167928 60096155 ~ 60097909 (+) True G29580
TU39740 lncRNA downstream 9296 60282585 ~ 60285943 (+) True G29639
TU39743 lncRNA downstream 14578 60287867 ~ 60288093 (+) True G29641
TU39764 lncRNA downstream 78029 60351318 ~ 60353130 (+) True G29662
TU39765 lncRNA downstream 83188 60356477 ~ 60356882 (+) True G29663
TU39785 lncRNA downstream 108752 60382041 ~ 60382256 (+) True G29679
XM_007256658.3 mRNA upstream 174029 60061098 ~ 60091808 (+) True rhoj
XM_007256654.3 mRNA upstream 479176 59767382 ~ 59786661 (+) True LOC103031133
XM_007256655.3 mRNA upstream 500764 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA upstream 500764 59753476 ~ 59765073 (+) False LOC103031439
XM_015607684.2 mRNA upstream 667505 59586709 ~ 59598332 (+) True nme6
XM_007256665.3 mRNA downstream 6550 60279839 ~ 60281890 (+) True LOC103034839
XM_007256671.3 mRNA downstream 122289 60395578 ~ 60462048 (+) True LOC103036511
XM_022663950.1 mRNA downstream 122975 60396264 ~ 60462048 (+) False LOC103036511
XM_007256672.3 mRNA downstream 173416 60446705 ~ 60462048 (+) False LOC103036511
XM_007230914.2 mRNA downstream 212614 60485903 ~ 60490965 (+) True rd3l
TU39573 other upstream 667596 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 706085 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 1037138 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 1037275 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 1044801 59220532 ~ 59221036 (+) True G29382
XR_002649037.1 other downstream 157572 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 1419924 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1423511 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1652817 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2565946 62839235 ~ 62843043 (+) False LOC103045797

Expression Profile