RNA id: XM_007256671.3


Basic Information

Item Value
RNA id XM_007256671.3
length 3583
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC103036511
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60395578 ~ 60462048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGCATTACGTCAGCGTCGAAACACCGGACTGAAGAAGCGGTTTTCACACATGCGTGCAGCTCCGCCGGGAGGagaagctacacacacacacacacactgagagagaccTGCGACACGCCGCGGCTCGTCCTCTGAGCTCAGCCGGTCCCGTGCCCTCACTGCTCCGCTCTCCGGTTCAGATTAACGAGCCTCCGGTCGGTGCGAGACACAGCACGCGCTGACGAGCCCGCGAGACCAGCATGTCCGCCAAGCCCAGCGAGGAGCCCGCTTCAGAGGACGGCTGGTACGGAGACGGCTTCGAGAGGACGGCCGGGTTCGGCGGCGCCGCGGCCCGCTCAGGGGAGCCGGAGGACGATCGGAGCGAGTCCGCGCAGATCTACAGCCGCGCCGAGAGCGCGCGCCAGCCGCTCCCTGTTGTCATGGAAACTGCATCTACAGATAAACTGGATACAGACTTTCTGAAGAAGAACCTCGGTGACATGGGTGACCCATACACATCCCTCCTGTCCAGTCAGAGTTACTCCTCCCAGCAGGACACCTCCTACTTCTCAGGAGACCTAGGCAGAGGGGAGCAGAAGCAACCAATGGGTGTAGATGACTTCCTCAGTCTGGAGTCCCAGTCTGCCATGTTCAGCTCAGACTCGGGCATTGAGATGACCCCGAGCACCGAGCTGGGCTACAGTTCTCACAAGCCTTCTGATTCCACCTGCAGCTACATGGACATCAGTAGCAGGGAGAAGCCCCAGCAGCCTGAGGAAGAATGGGGGATAAGAAACGTCTCAGAACGTTCCCCACTGACCAGCCTGAGGGGAGAGTTCTACCTGGAGAAGAGCCCTTCCCCAGTTGAGGTGGAGACTCTGGGTCCTGCAGCAGCACTGGATTCACAGACCTTCCCCTTTGTTGAGGAGCCTTCAGATGATGAGCTGAGCGACTATCAGCCCTACCGTTCTCCAGGGGCTGAAGGCAACGCTAGCCCCGTCAAGATCACGTTGACTGAGATGCCATCATCTTCGACCTCGCCCACTCAGCACACCCCTCCGGTCACAGtgtcagagaaagagagcatcCTGAGCCTGGGGCTGCAGGGAGTGCCCACCGTCACACTGTCTGAGCCAGAGGATGAAAGTCCTGGCTCCTCCACACCACCTCTCACAGAGTCGGACTCTCCGTCTGATCCTGTGATTTATGCCAGTGAGGTGAAGACTGTGAGCTCCACTCAGGAGAAGATTCTGGAGTCTTCTCAAGCACCCTTTCAGAATTCCTCTAAGCAGAGTCCTTCAGTGGAACCTAAAATCAGCTCAACTTTTCCCTTATATGCTAAGGATGCTGATGCCAGTGGTGGAGAATCTGGCGACTCAGAGATTGAGCTTGTGTCTGAAGAACCTAGCCCACAGGCTCCAAGCTCTGGCTACATGAGCTTCAGCAAAAGtctaaccaccaccaccactactcCTTCAGCACCTGCTTCTGTTCAAgctactgctccagcctctgccCCTGCTCCTGCCCCAGCCCCTGCTCCAGCCACTGCAACAATTCCCAGCCCGGCTATGCAGTACAGCATCCTGCGGGAAGAGCGTGAGGCCGAACTTGACAGCGAGCTGGCCCTGGAGTCCTGTGGAGAAGAAAGCCCCAAAAGATTCCCCCTGGACTCCACCACCACCAAGCCAGGCAAGATCGATCCACATCCACCCAAACCTTCTTCTCCTGTGGTCACCCCCACAGCTACTCCCCCTGTGAGCCCCACCCCTCCTCCTGCAGCCCCCACCACAAATATACCTCCAAAAGAGAAGAGCCCAGTTGTGGAGGAGAAGCCCAagcccagcagcagcagtcccTTAGCGCCCAGCTCAGTCTTGCCGGAGCTGAAGGTAGAGCAGCCAACTGAGGAGAAGCTTAGTGAGAGAAGACGGTCCAGTCAGAGCCGTCGTGGCTCTGAAAGGCATTCCGCACCACCTGCCATCTTCCAGGGCCTGACCAGAGAGAAAGCGATGGAGCTGTTGTACTGGCGGGACCTGAAGCAGACAGGGCTACTGTTTGGAAGTGTGTTGCTGTTGCTCTTCTCTCTGACTCAGTTTAGTGTGGTCAGTGTGGTGGCCTACCTGGCCCTGGCTGCCCTTTCAGCCACCATCAGCTTCAGAGTCTACAAATCTGTGCTGCAGGCTGTGCAGAAGACTGATGAGGGACACCCCTTTAAGTCATACCTGGAGGTGGAGATTTCACTGTCCCATGATCAGATGCAGAGGTATGCAGAGAACGTTCAGCGCTACATTAACAGCACTATGAGGGAGCTGCGCAGACTCTTTCTTGTGCAGGACCTGGTGGATTCACTAAAGTTTGCAGTGCTCATGTGGCTGCTGACTTATGTAGGAGCACTCTTCAACGGCCTCACTCTTCTCATCATGGCTGTGGTTTCCATGTTCTCAATGCCTGTGGTCTATGAGAAATACCAGGCACAGATTGACCAGTATTTGGGCCTAGTAAAGACTCATGTAAACTCAGTAGTGGGGAAGATCCAGGAGAAGATTCCTGGGGCCAAGCGAAAGGCTGAGTAAAGCCTGAAGGGCAGCTGGAGAACACAAGGATGCCCTGACCTGCATTTCCTTTATTATAGGGAAAGTTAGATGTTGGTCAGGGGGTTTcgcaacaacacacacacacagatacacacacagacacacagatacacacacatacataaacatacacacaaatgtACAAGTTACTGGAGCATAGTTCAACTTTGTGCACACTGTGGTGTCTAGAGCAACAGCCAAGCCGCTCAGGAGAAGTCCCACCCTCGCCCAGTAaccataaagtaaaaaaaaaaaaaacgcgctGTCACTCAAGCACTACGCTCTagtgaggggggaaaaaaacaacaaaatatagGAGTAagttgaaacaaaaaaaagacaaaaaaaaaattgtttttgtgttgCTTCTTAAGTGCATGAAGTCAAGAGTCTTAAGCGCTGatgcatttcttcttcttctctggtTTCCTTTGTTCTTGGCTTTATCAGCTATGCTGAAGACATTTCTCTGTAGTGTGTGAAGAATCTCTTCAGCTTTAGTGCTCTCCTGTGATAGTCTCTTCTTcttcaagaaaaataaaaaagcagcttctTTCGTCTCCGGGGCGTCGGGTGGGGCTTCTCTTCTCTCAGTATACCTGAAAACATATAAACTtcaatattacttaaatatcAGCTAGACGCGGTGGCCTGCCGAGGTTTACCTTCTTTGTGTGGCACAAGAGCAAATATTTAGCAATGTTCTGATTAGATATGGTAAACTAActtgtagtgtgttttttttatatatatgaatatataactCATTACGGGAACTACAGAGACTCATGGTTTTAGGTACTGTCGTCAATCTTCTTTTAAGCAAATTGCAATCGAACAAGAGAGACGGAGGAGGATGAAGCGTAAAGTGAACGGGTGCCTGCTTGGTGATTCTGTCCATCTTTGTACTATGTTGAGTGTAGTTCTTCTTAGCCATGGACTCTTAACTATTTGCACTTAAAATGTACTCATCACTGAATGCGGAAataaatgttcttaaatgtA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20721 RTN1; reticulon-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39785 lncRNA upstream 13322 60382041 ~ 60382256 (+) True G29679
TU39765 lncRNA upstream 38696 60356477 ~ 60356882 (+) True G29663
TU39764 lncRNA upstream 42448 60351318 ~ 60353130 (+) True G29662
TU39743 lncRNA upstream 107485 60287867 ~ 60288093 (+) True G29641
TU39740 lncRNA upstream 109635 60282585 ~ 60285943 (+) True G29639
TU39800 lncRNA downstream 1929 60463977 ~ 60519867 (+) True G29691
TU39856 lncRNA downstream 58294 60520342 ~ 60525051 (+) True c3h14orf2
TU39919 lncRNA downstream 227953 60690001 ~ 60690253 (+) True G29772
TU39923 lncRNA downstream 238297 60700345 ~ 60702123 (+) True G29775
TU39965 lncRNA downstream 365689 60827737 ~ 60827940 (+) True G29812
XM_007256665.3 mRNA upstream 113688 60279839 ~ 60281890 (+) True LOC103034839
XM_007256666.3 mRNA upstream 122289 60265837 ~ 60273289 (+) True LOC103035162
XM_007256658.3 mRNA upstream 303770 60061098 ~ 60091808 (+) True rhoj
XM_007256654.3 mRNA upstream 608917 59767382 ~ 59786661 (+) True LOC103031133
XM_007256655.3 mRNA upstream 630505 59753476 ~ 59765073 (+) True LOC103031439
XM_007230914.2 mRNA downstream 23855 60485903 ~ 60490965 (+) True rd3l
XM_022663952.1 mRNA downstream 58302 60520350 ~ 60522292 (+) False c3h14orf2
XM_007230920.3 mRNA downstream 70694 60532742 ~ 60599366 (+) True ppp1r13b
XM_007230918.3 mRNA downstream 83908 60545956 ~ 60599366 (+) False ppp1r13b
XM_007230917.3 mRNA downstream 83909 60545957 ~ 60599366 (+) False ppp1r13b
TU39573 other upstream 797337 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 835826 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 1166879 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 1167016 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 1174542 59220532 ~ 59221036 (+) True G29382
trnad-guc other downstream 1231165 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1234752 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1464058 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2377187 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 2873686 63335734 ~ 63345693 (+) True G30362

Expression Profile