RNA id: XM_007257007.3


Basic Information

Item Value
RNA id XM_007257007.3
length 3429
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC103034091
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62798619 ~ 62817748 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACGCCCCGCCGCCGCCACACCCAAAACCCCCGCCCGGCACGGAGCGAGCCACCGCCGCCCTCCGCACCACACCTCACCCACAGGACTTTAGCCTAGCCCCCCTCAGCCTCTGGAGcggacaccacacacacacacacacacacacacacagtactgaccGAGCTAACATGTCGCGGGTCGGCCCTTCCTGCGctctcctgctgctgctttcGgtGCTGTGCTATTCAGTGGAGTCATGTGTTCAGAGGCATGTCAGAGCACAAGTTCCTGAGACGCTGCAGGCTGGTTATGCTGTCTCCAGAGTGAATCTGGAAGGCTGTGGGATCAAGCGACTGCAATTGGCTTCTAGTGACCCGGACTTCACCATACAGACAGATGGAACCATTCTAACTGTGAGCATCACCACAGTACCAGACAGCGGCAAGTCTTTCTGCATATGGGTGCAAGACCAGAGAGGTCATAAGTGGAAGGTGGATGTCAGCCTTACTCCCATAGAGCAGATTTCTCAGAAGTCCAGTAATGTGGTTCTTAGACGTGCTAAGAGAAGATGGAGTCCTCTACCTTTCAATATCAAAGAGAATGATCCAGGCCCTTTCCCTAAGGATGTGGAGTTTATTGCATCAGACTCCTCTTTAAATTTCTCAGTATATTACACGATTGATGGGCCTGGAGTTACCACTGAGCTTGTGGGCCTTTTCTCAGTTGTCCCCAATTCCGGCTTGCTGAGAGTCCACCAAACCGTTGACCGTGAGATGTACCCTCAGTTCGTATTCACAGCTCATGCATTTGACAGATACTCTAATAAGGAGACAGACCTTCCATTAAAAATCACTGTGAACGTGAATGACGTGAATGACAATGCTCCTCAGTTTTCAAGCCCTCTGTTCTTTATTGTGCCGGAGCAAAGTGACCCAGGCACTATTGTAGGACAAGTGAATGCAACAGATAGGGATGAGCCCAACACTCCCCACACCAAAATCAGGTACACTCTAATAAATGGCACGGACCTTTTCAACATCAATCCTTTCAGTGGAGTTATAACTACCAAAACCAACACACTGGACAGAGAGactCAGGACAGATACATTGTTAAAGTAGAGATCAGAGACATGGGTGGAGCATCAGATGGACTTTTCAGTCAAGGTTTGGCTTCGATCTCTCTGGGTGACATCAATGATAATCCACCTATCTTCAAAGAAAAAGcaTACAAGGCTCAGGTCCAGGAGAACCAGGCAAATGTGTTGGTCCTTAGAATCCCAGTAGAGGATAAGGACCTACAAGGAACTCCGAACTGGAAAGCAGTGTATGAGATCACCAAGGGCAATGAGACTGGAAACTTCTGGATCAAGACTGACCCCACCACCAATGAAGGGCTTCTCTACGTCACAAAGCCTCTGGATCGTGAAAAGCAGGATTTGGTAAAGCTGGAGATTATGGCCCGTAATGAGGTTCCTCTGGTGCAGAGTAGCTCCTCTTGGATGAAGGTGCCTGTGGACCTCACTGTGACTGACGTGGATGAGGGACCAGAATTCTCTGCACCCATACTGCGGCTAAAAGTCAAAGAGAACGTAGCCAACGGAACTCTCATTGGAACCTACACAGCCATCGATCCAGAGACGAAGAGCAGCAAGGGCATAAAGTACTACAAGTTGACTGACCCAGGTTCCTGGATCAATGTGATGGAGACTACTGGTGAATTGAGGACCGCAAACACCATTGACCGAGAGTCACCTCTTGTCTACAATGAGACATACAACATCACTGTCAAAGCTGTGGATGAAAGTCAGAAGACTGGTACAGGTACAGTCGTGATCCTGATTGAGGATGTAAATGATAACTACCCGGTGATCCCAGTACCAGACCGGACGGTGTGCtcaaaagaaaatcaaaggagCTCTACGACCGTTGAAGCTGTGGACTCTGATAAATCTCCGTATGCTGGCCCTTTTACCTTTGAATTAGGGCCAGGAAATGATGGGAAATGGAAGATCAAGGATCCCAAGCCAGGTACCTCAGTGGTCCTGGAGCAGGCCGAGGACTTGCCGAATGGCCAGTACAAGGTCCCCTTGATTGTGAAGGACCTCCAAGGTGAAGGGACAGAGCAGACTGTAAATATCCAAGTGTGCACATGTGTAAGGGATGGAGAGTGTGCAGCTCAGAAGATTTCTGCCAAACTGGGAGTGTGGGCCGTTCTCGCCATGCTGCTGGCCCTGCTGCTTCTCCTGCTGCTCTGTTTGCTGTTTGTCTTGGTGTGCAGCACGAAGGGAGAGAAACTGCGCATGACTGATGATTATGATGGAACCGGGGGAATGCTGCTCAAATCTAACACTGAGGCTCCAGGGGAGGAAGTGAAAGACGCTCTGCTGGTGATGCCTGGCAGTGGAGTAGATATAGTGGATGGCTCCAAAGGGGGAGCAACCATGGAGCATCAGACCATGCTGGGCACTGCAGGAGGGGCCTATGGGCAGCACGCCATACACGGAGGAAGCATGTACCAGACCGGCACCCAGGGCTACATGACCAACCAAAGCATGTTTTCCTCTGGACAGTATGGTGCAGGCTTTTATGGCAACACCATGTACAACAAGTTCTCTGACATGTCCGCTCTGGACACATGGAGGACCAATGAGCTTTACCTGGACAACAAACTGGCCTACTTTGGGGAGGAGGAAGATGGGCGGTATGCGGCAGATTTGCTAAAGGCTTATGGGTACGAGGGGATGGGTTCTCCTGCAGGGTCTGTTGGGTGCTGCAGTGTCATCAGTGACCAGGACACGTTGGACTTCCTCGACTCACTTGGGCCCAAATTCAGAACACTTGCTGATGTGTGCACGAACAAAGCAGAGAGGGGTCAGCAGTAAGACAGGTGGGCTGGTGGGTttggggaaaaaattaaaaaagagcgTGTGAAATGACTTGAGATCAGCTCATGAGAAGTGCTTATAAGAACTGATCTGTCCTTCCTGAGAAAAGGAGAAGAGTAAGAGGAGAAGCAGAAACACTGGATGTTGCAATCAGCAGTCACTGGAATCTATCACCAGGGCTCTACAGCCTTGCATATTACTGCCTGGAGCTTTCTAACCATGCTTTTTCTAAGAGAGGACTGATAGAGAAGAGCTGATGCATTTGTATGAAATGTGttggagtgagagagtgtgtgtgtgtatgcgcgtGTGTGGTTATATTTTGTAGATGAGCTATTGGACAACACAATGTTTCtacttttactgtattttacggactataaggcacaccgtattataaggcgcactatcaataaacatcttattttcttgtctatttttatacataaagcgcaccgtattataaggcacatttttagCGACAATAGAAAGGAACatgggtgtcaccatgtttcccttctaatggggaagcgcctaagtaaaaaaaaaactgtaattcttaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0002159 desmosome assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K07600 DSC1; desmocollin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40418 lncRNA downstream 47084 62718293 ~ 62751535 (-) True G30150
TU40405 lncRNA downstream 54331 62737207 ~ 62744288 (-) True G30141
TU40334 lncRNA downstream 538293 62260122 ~ 62260326 (-) True G30093
TU40322 lncRNA downstream 562025 62232928 ~ 62236594 (-) True G30083
TU40320 lncRNA downstream 562832 62233818 ~ 62235787 (-) True G30081
TU40472 lncRNA upstream 21386 62839134 ~ 62843134 (-) True G30196
TU40512 lncRNA upstream 109166 62926914 ~ 62929726 (-) True G30229
TU40515 lncRNA upstream 113370 62931118 ~ 62931764 (-) True G30231
TU40531 lncRNA upstream 148701 62966449 ~ 62967328 (-) True G30247
TU40594 lncRNA upstream 199951 63017699 ~ 63018729 (-) True G30288
XM_007233018.3 mRNA downstream 436359 62301147 ~ 62362260 (-) True LOC103030680
XM_022668152.1 mRNA downstream 583953 62213160 ~ 62214666 (-) False LOC111191939
XM_022668148.1 mRNA downstream 583964 62213160 ~ 62214655 (-) True LOC111191939
XM_007233017.3 mRNA downstream 740756 62046691 ~ 62057863 (-) True LOC103030167
XM_015601215.2 mRNA downstream 758780 62009807 ~ 62039839 (-) False LOC103031849
XM_007257013.3 mRNA upstream 125325 62943073 ~ 62962918 (-) True b4galt6
XM_022664256.1 mRNA upstream 161564 62979312 ~ 63007981 (-) True LOC103046711
XM_007257016.2 mRNA upstream 196490 63014238 ~ 63065232 (-) False trappc8
XM_007257015.2 mRNA upstream 196490 63014238 ~ 63065232 (-) False trappc8
XM_007257014.2 mRNA upstream 196490 63014238 ~ 63065232 (-) True trappc8
XR_002649101.1 other downstream 910731 61833448 ~ 61887888 (-) False LOC103043586
XR_002649735.1 other downstream 2429005 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 2636595 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 3360321 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 3863830 58932963 ~ 58934789 (-) True G29317
TU40670 other upstream 392533 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 392533 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 392533 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 512296 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 616044 63433792 ~ 63465756 (-) False usp46

Expression Profile