RNA id: XM_007257013.3


Basic Information

Item Value
RNA id XM_007257013.3
length 3020
RNA type mRNA
GC content 0.47
exon number 9
gene id b4galt6
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62943073 ~ 62962918 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGAGTAGGAagactatcatcatcatcatcatctgaaTTCCTCCTTCTCACTCAGTCCgtttcaaacatggtggtgccTGCTCCGCTGCGGATATGAATGGATATTAGTCACTCCCCTCCCGCTGTCACTGAGAGCCGGCGATGCTGCGCTGTGTGCGGGGTGCGGGGCTGGACGCTGCTTGGTAGAGCGCCGGGCCTGCTTTCTTCATCAGTCTGGAAATTTCTTGACTTCAGCAGTTCGGCTGTTTCGGGCCGAGCGAGCTCCACGCTAGCCGCACCGCCGCATCCCTCTTCCCCGCTGGCCCGCCCAGGCCACAGCGATGCGGACTTTAGCGGACCCCTGATCCCCGGGAGCACCGCGCGTATCGCCAGTCAGAGGACGGGGCTGAGTGTTTTATGGACCTGACGGTTAGCCGGTGGTAGCGGCAGCAGCGGCTCGGCGCGGAGACATGTTCAGTACGAGGCGGCTGTTGCGGTTGTCGAACCGCTCCTTTTTGGccttcattttcttcttctccaTGTCCACCACCTGCCTGTACTTCATATATGTGGCCCCAGGAATAGCCAACACATACTTCTTCATGGTGCAGGCTCAGGGTATTATGTTGCGGGACAACGTGCGAACATTTGGTCAGATGATCAGATTGTACACCAATAAGAACAGCACGCTCAATGGCACAGATTATCCAGAAGGAAATAACTCCAGTGAATATCCTGTTCAGCCGACTACATACCTCCCAGAGAATTTCACCTACGCCCAGAATCTGCCCTGCCCTGAGCGCTTACCTTCTATGAAGGGTCCTATGGAAATAAACATGACTGAAGTTCCTATGGAGGAAGTTGAACTACGCCTTAGCCAGCTGGGTGTTCAGTCTGGGGGCCACTGGAGGCCTGAAGACTGCAAACCACGCTGGAAGGTGGCTATTCTAATCCCCTTTAGGAATCGTCATGAACATCTCCCCATCTTGTTTCAACACCTCGCTCCAATGCTGCAGCGCCAGCGCTTACAGTTTGCATTTTACATAATCGAACAGaCAGGTACACAGCCATTTAATCGTGCTATGCTCTTCAATGTGGGCTTCAAGGAAGCGATGAAAGACCTGGACTGGGACTGCGTTGTGTTCCATGATGTTGATCATATCCCTGAAAATGACAGAAATTATTATGGTTGTGGGCAGATGCCTCGCCATTTTGCTACAAAGCTGGACAAGTACATGTACATCCTGCCCTACAGCGAGTTCTTCGGAGGAGTGAGTGGGCTCACAGTGGAGCAATTCCATAAGATCAATGGCTTTCCCAATGCATTCTGGGGCTGGGGAGGGGAGGATGATGACCTCTGGAACAGGGTGCATTTTGCTGGCTTTAATGTGACGAGGCCAGAGGGAGAGATTggcaaatacaaatcaattcCACATCACCACCGTGGAGAAGTGCAGTTCCTTGGAAGgTATAAGTTACTAAGGTATTCTAAAGAAAGGCAGCATCTGGACGGCCTGAACAATCTCCAGTATTCTCCAGAAATCTCTTTAAGTAGTCTGTATAAGAACATCACTGTTAACCTGAGCCCTGAACTGGCCCCCATAGCAGACTACTGACCAAGCTCTCTTCCATTCACCTCACCTGTCCCTCGATACCCCGAATATGATCCAGCACCCAGTGGCGTGGGGAGGGGTGTGTGACTGCAAGCATTGACGTACTGCTGCCAAGTTACCTTAAAACCAAGAGACCAGAGGTTAAAGGCCTGAATTCTCGAAcaattgattgtgtgtgtgtgagatcgtGTGTATGTTGGATCATACCACCAATGTTTTTGTAAGTGTGTgcctgtgagagtgtgtgtgtgtgtgagaaagagtcCCATTGCATGTTTCTGTGTTCATTCTGGCTTTAGCAACTCGAATCGCGTCACGCTACCAAAAAAAGACAATTAAGGGGTTAAAagacaattacaaaaaaaagagagagagacagagaaaggcaGGGAGTGCCAGCGTCAACAAATCAGATGTTTACTGCGAAGCCTTAACTGATTTTCATAGGCTGTTATCACTCTGTGTCTGTTTCATTTGTGCTGACAATGTagaaaagctcagttttacaATTCAGCAGAACCCTAGACGCcaatagactttttttttacggtatgatactgtagtattttaaaACATAGTATTTTTTGGTCTTGACAAAGATttgtgtatgtactgtatattttgaaacaatttgtttttgtatttattttggacTTTTATCGAGATGTGTTTGGGAGCACTCCAGTGGTGTGTGTCATGTGAGCATCGTTGTTTCTGCGTTCCATTTGGCTGTGCAGAGGACTGCTGTGAGAGCTTGCATGATCCAGACTCTGTCTGTAAATTCCCGCCTCTTTTTAATGATGCTGTCGCTGAGTCCTGTAACGACGCCCATCATTCcagtgcgcgcacacacactctcttactttGGCAGCTATgtgtctttctttccttctttctttctattattTCTCTTTACGAGAATTAGACACCTCTTAAATTAAGGACTCAAATAAAACAGTAGGTGGGATACAGGGATCTGCTcactatatacatatttaaaaaatcagcaAAACACCAATATCAGCTGCATGCCTTACTTCTTTTGTtgccagattttttttaaagctttttttaaaacgttgaaattttttttgttcttcctTTCTAAGTAGTTTGTAGTTTTTCTTCCTTGCTCTTATTTGAAATGCACTgtacaaacagaataaaagagagCAGGAGAAGGCAAAGACAGTAAAGGAGCGaggtgggcttttttttttttttttttggaaggaaGACCTGCTGGTCATTGGGGTTCACAGCTGCTAAAAAGCCAAATAGCCCTTCACTTGGTCTggcatctgtgtgtgtctctgtgtgagcGTGTCTGTATGAGTGAGTTATTAGTGAATGGTGCTCTAGCTCTGTGTAATGAAGTACCTTGTAATGTTGCACTCTAGTCTGAGCGCAAGTTGGGCCTGGATGAG

Function

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0008489 UDP-galactose molecular_function

KEGG:

id description
K07553 B4GALT6; beta-1,4-galactosyltransferase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40515 lncRNA downstream 11309 62931118 ~ 62931764 (-) True G30231
TU40512 lncRNA downstream 13347 62926914 ~ 62929726 (-) True G30229
TU40472 lncRNA downstream 99939 62839134 ~ 62843134 (-) True G30196
TU40418 lncRNA downstream 191538 62718293 ~ 62751535 (-) True G30150
TU40405 lncRNA downstream 198785 62737207 ~ 62744288 (-) True G30141
TU40531 lncRNA upstream 3531 62966449 ~ 62967328 (-) True G30247
TU40594 lncRNA upstream 54781 63017699 ~ 63018729 (-) True G30288
TU40597 lncRNA upstream 103611 63066529 ~ 63069341 (-) True G30291
TU40608 lncRNA upstream 121409 63084327 ~ 63086956 (-) True G30296
TU40588 lncRNA upstream 162596 63125514 ~ 63134734 (-) True G30286
XM_007257007.3 mRNA downstream 125325 62798619 ~ 62817748 (-) True LOC103034091
XM_007233018.3 mRNA downstream 580813 62301147 ~ 62362260 (-) True LOC103030680
XM_022668152.1 mRNA downstream 728407 62213160 ~ 62214666 (-) False LOC111191939
XM_022668148.1 mRNA downstream 728418 62213160 ~ 62214655 (-) True LOC111191939
XM_007233017.3 mRNA downstream 885210 62046691 ~ 62057863 (-) True LOC103030167
XM_022664256.1 mRNA upstream 16394 62979312 ~ 63007981 (-) True LOC103046711
XM_007257016.2 mRNA upstream 51320 63014238 ~ 63065232 (-) False trappc8
XM_007257015.2 mRNA upstream 51320 63014238 ~ 63065232 (-) False trappc8
XM_007257014.2 mRNA upstream 51320 63014238 ~ 63065232 (-) True trappc8
XM_007257024.3 mRNA upstream 151172 63114090 ~ 63119496 (-) True LOC103038514
XR_002649101.1 other downstream 1055185 61833448 ~ 61887888 (-) False LOC103043586
XR_002649735.1 other downstream 2573459 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 2781049 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 3504775 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 4008284 58932963 ~ 58934789 (-) True G29317
TU40670 other upstream 247363 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 247363 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 247363 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 367126 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 470874 63433792 ~ 63465756 (-) False usp46

Expression Profile