RNA id: XM_007257016.2


Basic Information

Item Value
RNA id XM_007257016.2
length 5577
RNA type mRNA
GC content 0.51
exon number 29
gene id trappc8
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63014238 ~ 63065232 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGAGTTAAATCGGTCAGCAGGGGGGACTGTAGAGTCCATCATGGCTGCTGCGGGCTGTCAGTAGAGGGACTTGTTTTTAACTCTGTAGCGGCTCCTCTGTTCTCGGTGACACTCCCGCGCCCGGCTCGTCTGCTCCCCCGGTTCTCGCTCGGACTGCCCGCTGGACCGGCGCCATGGCCCAGTGCGCCCAGTCTGTGCAGGAGTTCATCCAGGACTCGTTCGTGCCGATGGTGGCCGTCCTGTGCAGCGAGGAGGCGGAGAGAGTGACCCGCAGGAACTGCCTGAGCTTCCCCGAGCTGCTGCGCCCCTTCTGCCGGCTTCCCTCGGAGGGTCACTTGCGTGACCCCAATAAccaggtggtggtggtgaaggGCCTTCGGATTAGCGTGACCGGAGTGAACACTCGACCACCAAATTCCGGAGAAGTCCGCAAGGTCTTGAGCCAGGCTGTGTCCGGCTGTCAGCCTCCTGAAGGGCTACCTGCTAACGTCATCACTGCTGGAGACTACGACCTTAACATCAGCGCAACAACACCATGGTTTGAAGCTTACAGGGAGAACTTCCTACAGTCCATGCCTCCAACAGACCATGAGTTTCTTAACCACTACTTGGCCTGCATGTTGGTGGTATCTTCTCGTGAAGCCGTTCCCACAGAGCAGTTTCTGAAGCTTTCTCAGGAGCAGCACAGGATTCAGCACAGTGGAGAATACACCCATCCCAAATGGTTCATTCCAAACACCCTCAAATACTACGTCCTGCTTCATGACATCAGCGATGGAGATGAACAGAGGGCAGACTCTGTATATGAAGATATGAAGCAGAGATATGGTACTCAGGGCTGTTACCTGTTAAAGATCAACTCCAGAACTGATGCTGCTGGACCAGATGAACAAATGCCTGACCCCTGGAGTCAGTATTTACAGAAGACTAATTTGCACAGCCCTTATGAAGAGACCATGGTGAATAATGTTGTCGAGAATAACATCAGCTCAGAAGTGGATGAACTTGACTCCTCAGACGGGGTACCAGAGTCCCATCCACTCAAGCTGGATCAGCCAGCTGATTCTGGATTTCCTGGTGACCCCAGTGAATCAGTGAACAGTGCAGACGCAGCAAAGAAACAGGGGGTAGTGACGCCCGTGGCTGCTCCAACGACCCACGGTGCCTGCCTGACCCTCAACGACCATGACCGCATCCGACAGTTCGTCCAGGAGTTCACCTTCAGAGGACTACTGCCTCACATAGAGAAAAATATTCGACAGCTTAATGACCAGcTGGTGTCCAGGAAAGGATTGAGTAGATCTCTATTCTCAGCCACAAAGAAGTGGTTTGGGGGAGGGAAAGTTCCTGAGAAAAGTATTGCTgaactaaagaacactgcaggATTATTATACCCTCCAGAAGCTCCAGAGCTGCAGATCAGGAAGATGGCTGATCTCTGCTTTCTTGTTCAGCACTATGAGTTGGCCTATAGCTGTTACCACACTGCCAAGAAGGACTTCCTCTCTGACCAGGCCATGCTGTATGCTGCAGGAGCACTTGAGATGGCTGCTGTGTCTGCGTTTCTGCAAAGTGGTGCTCCCAGGCCGTACCCCGCACACTACATGGAAACGGCTATTCAGACCTATCGAGACGTCTGCAAGAACATGGTCCTGGCTGAGCGCTGTGCTTTGTTGAGTGCTGAGGTTCTGAAGAGTCAGGCCAAATACTCTGATGCTGCAACACTCCTAATCAAGATGACTAGCGAGGACTCTGATCTGCGGAGTGCGCTTTTACTGGAGCAGGCAGCTCACTGCTTCATTAATATGCGGAGCCCCATGGTGAGAAAGTTTGCGTTCCACATGATCCTGTCAGGTCATCGCTACAGCAAAGCGGGACAGaAGAGACATGCATTGCGGTGTTACTGCCAGGCGATGCAGGTGTATAAGGGGAAGGGCTGGATTCTTGCTGAAGACCACATCAACTTCACCATCGGCCGGCAGTCCTTCACACTGCGTCAGCCTGAGAACGCTGTAGCTGCCTTCCGGCACATTCTCATCAACGACAGCAAGCAGACAGCCACTCAGCAGAACGCCTTCCTCAGGGAATACCTATATGTCTATAAGAGTGTGGGTCAGCCGCCCAGTGAGAGCTCACTGCCTCAGCTCCCACTACCCTGCCTTCATAGTGCCCAGACACGTGTGTTCTTTGGCCATGAGCGCAGACTTGCACAGgGAGAAAAGCAAGCTGCCACCCACGTGTGGCTGGATCATCCATATGACCGGGAACAGGCCCAGTTGTGGGCAGAGTTAGAGGAGCAGGTTGTGGCTGTGGCCAACAGGGGAAGCGTGCCTATCAGCTTCCAGCCCACACAGTACTGCCTCAGCAGCCACACAGACAACCTGCGCTACCCTCTTGCTGTGGTAGAAGAACCCATCTTTGTAGAGATAGTGTTCAGAAACCCTCTGAAGGTTCCCTTGGCTCTGTCAGACCTGTCTCTGCTGTGGAAGTTCACAGCAAAAGACTTTTCTGCACTTCAAGGTGGCACACTTGGAGAACCGATTACCAATGAGAACGAGGCAGCCACAGGCAACGCCGCAGCGCTCAATAACATTATCAGCACTGAAGTCATTCCAGAGTTCACAGTCAGCCCGGAGGAAACGAAAgtgGCTCGACTGAAGTTGCTCCCTCATAAAACCGGAGAGCTACATGTGCTTGGTGTGGTTTACAACCTGAGCACCAGAGACGATGAGAACAGCGCTAGTGAAGGCAGTCAGTTGATGATTGTGCGCGGGCGGCAGGACCTGGAGATTCAGGGGCCGAGGCTCAATATGACCAAAGAGGAGAAGACCTCCGTCACACATGGACCAGACAGACGCCTGGACCCCATCATCACCCCTCCGATGCCCTTGCTGGAGgtgttCTTCATTAACTTCCCTTCGAGTTTGCTGTGTGGTGAGATCAGGAAAGCGTGGGTGGAATTTGTCAACGTGAGCGCAGCTCCTCTCGCTGGGCTGCGGGTGGCCTCCACACACCCAGAGTTTTTCACATTCGGCAGCGCCGCCTCTGACCTGACCCCTGTTACCCCTACGGCTGCCGAGCATTGCTCCGCATACAAGACTATGGCCACGCCCCCGTCTGACGGCACAGTGACGCTGGTGTCTGCTGCTACATTTGGCGTTAATGGGAATGACAGACCGACAGTGGTGGATATTCCTTTAACAGGAGGCGTACTGGGACCAGGAGAGGCGCTGCAGATCCCACTGTGGCTAAGAGGACCTGACCGAGAGGGGGTGCACGAGATCCACTTTCTGTTTTACTACGAGAGTGTGGAGAAAAATGCAAAACTCAGTCACAGAGTGCTACGTCACACAGCTTTTATCTGTGCGAGTCGTTCACTCAGTGTGAAGGCGACAGCATGCCGCAGTAACACACTGCCAGGAAGAGGCaaaaaggaggagagagaggaggagcgTAGCGGCAACATGCTGGTGTTTGTGGACGTGGAGAACATCAACACTAGTGAAGCAGGAGTTCGGGAGTTCCATATAGTGCAAgtgtccagcagcagcagacagtgGAGGCTACATAAATGCATCAATCCTGCAGGAGACAGAGactcCAAGTTGGGCAGCAGGGAGAGGGGGAAGCTGTGCTTCAGGGCAACTAGATGCAGAACACAGGAAGCTACCTCAGGCACACTGGAGAAATACACTTTTGCAGACCTAAATCTCGGCAATGAACAGATTGTCAGTTCTATGACTCCGTGTGCAGACTTCTTCTTCCGGAGAGGTCCGCCCTCTGAGTCTAGGAAAGGGGTTGCTCCCACAGGCCTTATAAGGAGGCAGAGCCTAACGCCAGCAAGCAACGCTGACGACAGCATGACCAGTATTGTTCGCAAATGCAGTGAAGTGGAGCTCGACATTATTGTGCTGTGGAAGGCCTATGTGGTGGAGGACAACAAGCAGCTCATTTTAGAGGGACAGCTTCATGTGGCTCTACAGACTATTGGCAAGGAAGCCTGCTCCCTCTCACAGAAAGAGGATGCTCAGGAGATGGTGCTGCTGAAGTTCAAGCCTGATCTTCCTCCACCTGTCAGTAGACCCACGCTGGAACAGCTTTCTCATCTCATCAAGACCTGTCTGCACTACCCGGAGTCCTACGACCACCCTTTCCCACAGAAGAGTTTATGCATGGTTCCAGTTACCTTGACATTGTCCAACTGTTCCCTGGCTCAGGTGGATGTCATTATTGACCTGCGTCACAAAACTACTAGcccgGAGTCGCTGGAGGTGCATGGCTCTTTTACCTGGCTGGGACAGACGCAGTACAAGCTGCAGCTGAGGCCACAGGAAGTCCATCGACTGTCCCTTCAAGCCTGCTTCTTTCAGGCTGGTGTGTACAACCTTGGCACGCCGCGGGTATTTGCCAAGCTTGCCCAGTCAGGAACGATGTGCGAGACCAGCCAGCAGAGCGCTATGCCAGCCCTGATCATCATCAACAGTGTGTGAGCCACTCGTCAGCACTGTggtctgctgctgctctccCAGCATCGACTCTTGTCTCTCCAGCTAAATCCTACAGCATCCAGACTGCAGCTGTTTTCTACTTCTTAATAATAGAAATGAGGAGAAACCTGAACTGGAAAAAGTTTAGTAAGTTTCAGTTCAGTACTGCATCTGACGTGCTTGTGAACTCTGGCGAGATGGTTCAAAACTAATTGTACCCCTAGCTGTTTTTGtcttaaatgcaaaaaaaaaaaaaatcatggactcgaagtttaaaaaagctctttTTGTTCTTTCCCCAATAATATTTATCTCATGTCAGCAgggtctttttattttaaatataaatgaaatccATTTTTCCCCTTCCTCTTTTTAAGAGCCCTAATGGAATAATTACCCAGAtcaaatgctcaaaaaatataACCCTGTGTATGAGAGTGCTAATAGGATGTGTTCAGTCTCCTCACACTGCCCATGCTTAAGCTGCAATGCTTTGTTGCCACAGTAACAAAGACCTTCTCTCCACATGGCATCTTAAAACTGGATAGTTAAAGACAGTAACGTGTTGAACGGCTGCAGAAGTACCTGCTGAAAAGGACCAGAGGATATTTCATATCCAATAAGCCGACCAGCACAAGCTGTCTGAGCCAATGAGGAGCCGGCGGGaagaagagagtgtgtgtctgtgggtgtctgtgggtgtgtgtttgtttgtgcgATCCTTTGAATAAAGAAAGCAATGTGTGGCGCTCACCAAGAAAGCAGCAGGATCTTAGCCCACTGAAGCAGTATGGAATACTGAACACAGTGAAACAGGCTGAGAGTCACTGTTGGGTGTGTGTACAGGTCCTTGtggcgtgtgtatgtgtgcgcggAGGTGGTTGGGCTGGACTGTTTTCACAGGAAAAAGATTAATTTTCTACAAAACCAATCATCTTCCCCTTCCTCCACCTCTCACTGTCTGCCCTCATCTGATCCAgctgttatttaaatgtatctaCATGACTGCTTTTCAGACAGAAAtgatgtattatatttataacaaaTTACTGtacatagaataaaaataaccaAATAACCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40531 lncRNA downstream 46910 62966449 ~ 62967328 (-) True G30247
TU40515 lncRNA downstream 82474 62931118 ~ 62931764 (-) True G30231
TU40512 lncRNA downstream 84512 62926914 ~ 62929726 (-) True G30229
TU40472 lncRNA downstream 171104 62839134 ~ 62843134 (-) True G30196
TU40405 lncRNA downstream 269950 62737207 ~ 62744288 (-) True G30141
TU40597 lncRNA upstream 1297 63066529 ~ 63069341 (-) True G30291
TU40608 lncRNA upstream 19095 63084327 ~ 63086956 (-) True G30296
TU40588 lncRNA upstream 60282 63125514 ~ 63134734 (-) True G30286
TU40668 lncRNA upstream 89699 63154931 ~ 63157654 (-) True G30341
TU40681 lncRNA upstream 226787 63292019 ~ 63295723 (-) False G30348
XM_022664256.1 mRNA downstream 6257 62979312 ~ 63007981 (-) True LOC103046711
XM_007257013.3 mRNA downstream 51320 62943073 ~ 62962918 (-) True b4galt6
XM_007257007.3 mRNA downstream 196490 62798619 ~ 62817748 (-) True LOC103034091
XM_007233018.3 mRNA downstream 651978 62301147 ~ 62362260 (-) True LOC103030680
XM_022668152.1 mRNA downstream 799572 62213160 ~ 62214666 (-) False LOC111191939
XM_007257024.3 mRNA upstream 48858 63114090 ~ 63119496 (-) True LOC103038514
XM_022678422.1 mRNA upstream 71719 63136951 ~ 63256445 (-) True fryl
XM_022664357.1 mRNA upstream 270618 63335850 ~ 63356289 (-) True lrrc66
XM_007257032.2 mRNA upstream 292679 63357911 ~ 63364411 (-) True sgcb
XM_007257034.3 mRNA upstream 368560 63433792 ~ 63465756 (-) True usp46
XR_002649101.1 other downstream 1126350 61833448 ~ 61887888 (-) False LOC103043586
XR_002649735.1 other downstream 2644624 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 2852214 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 3575940 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 4079449 58932963 ~ 58934789 (-) True G29317
TU40670 other upstream 145049 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 145049 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 145049 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 264812 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 368560 63433792 ~ 63465756 (-) False usp46

Expression Profile