RNA id: XM_007257017.3


Basic Information

Item Value
RNA id XM_007257017.3
length 2807
RNA type mRNA
GC content 0.48
exon number 29
gene id anapc4
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63066520 ~ 63086982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTAGTTATGTTTTTAGCGGCGGGTAGTAGAGAAGCCGGGCTGCTCAGCCCGCACACTgcgtgttatttatttatttcactggaTTAATAATAAGTGTTCAGCTTTTTCTGATAAAATCAGCGCGTGTGGGGATTATAGAGCTCAAGTCCAAGTCACCCTGATTACAGTTAATGATCTTTATTGAGCGTTCGAGTTTGGAAACGAAAGGGCTTCACAATGCCTGCTTTCCGACAAGTGGGGGAGAAGCAGCTGCCAAACCCAGTTCTGTACATGGCCTGGTCTCCTAAAAGGGACCTCATCGCTTTGGTCAACACAGCTGGTGAGcTCCTGCTGCATCGCCTTGCCAACTTTCAGCGTGTGTGGAATTTACCCCCAAGTGAAAATACAGGAAAAGAGATCACATCTTTGGCCTGGAGGCCTGATGGCAAAATCTTGGCATTTAGTCTGGGGGACACAAAGCAGGTGGTCCTGTGTGATGCTGAGAAGGCAGAGATCCTCCACCTGTTTACTGTAGACTACCCCGTGTCTTGCATGCACTGGATGGAAGTGCAGAGTGACAGcagtgtatCATCATCGTTCACTGACTCTGAAGATGAGTCCAACCGATTCCTGCCCAAGCTACCAATTTTACCCAAAAGCTACAGCTCCACATCAAAGATTTTCAGTGAAGAAAAATCAGATGAAGTCACCAACCTCTTGGGAGACGTGAGACTCAATATCCTGGTGGTAGGCGGGCAGTCTGGCTTTGTGGAACTCTATGCATATGGCCTGTACAAGATAGCTACACTAAACACAATTACCGGGGTTTGTCGCAGTCTCTGTCTCTCCGGTGACCTCAAGTCTCTTTCCATTATCACAGAAGTGAGATCTCCAGAAGACAATGCTGAGATCCATTACGTACAGTTGGATACAGGACTGCTTTCTTCTTGTCTTCCGGAGTTAACCAGGATGGCACGAAAATTTACACACATCTCCACCCTAATACAGTACCTGcgcctctctctcacttgtatGTGTGAAGCCTGGGAGGACATCCTCATGCAGATGGATCTCCGCCTCACCAAGTTTGTCCAGGAGAAAAATACCAACACTCAAGTTCAGGATGAGTTCTTGGAGCTTCTGCTCTGGGGACATGCAAGcCCTGAGCTGCAGGCTCTACTCATGAATCAGCTGACAGTCAAAGGCCTGAAGATGTTGGGCCAGTCTATTGAGTCATCCTACTCAAGCATTCAGAAATTGGTAATCAGTCACTTACAGAGtggttcagaagctctgctgtaTTATTTAAGTGAAGTGAAGGGCATGGCTTTGTGGAAGCAGAAGTTTCAGCCCCTGGGTCTGGACCCTACAGCCATAGAAGATGCCATCACAGCAGTTGGCTCCTTCACGCTAAAGGCTAGTGAACTCCTACAAGTGATTGATAAAAGTATGAAGAATTTTAAAGCTTTCTTCCGATGGCTGTATGTTGCGATGCTTCGCATGTCAGAGGACCATGTTCCACCAGAGCTAAACAAGATGACCCAGAGGGACCTTGCATTCGTTGCAGATTTCCTTTCTGAGCATTTTAGTGCTAACGAAGAGCTGTTTGATCGCAAAGGGAAGTATTTTAATGTGGAGCGAGTGGGGCAGTATCTGAAAGATGAGGATGAAGACCTGGTGTCTCCACCTAACATGGACGGAAACCACTGGGTGACGTTTGTTCAGCAGAGCACACACCTCAAAGAGAGCCCGCTGCTGTTCCCCACCTACCCGCAAAAATCCCTGCACTTTGTCAAGAGGATGATGGAGAGCACTATCGATATCTGTCTGCAGAAACCAGCTgGTGTAATCGGGGGTTCAGTGAAGCAGGCTGTGCGTTTACCCCTGTACTCCGTATCTAAGAGttctGAGGACACGCCTCGGTTGTTTGAGCTTCCTTCACTATGGAATGATAAGAATGCTGCTATGCACTATATAGTGTTCTGCATGCAAGAGATCTCACCCTCCAAAATTTACATTCTGAGAAGAGCAACAGATCCAAACAGgtCTGTCCCTAATGGCTTGGTGGCCATAGACCTGAATACTCCTCTGAACACTACTATTGATGATGAGGCGCCTGTAGCAGAGTCTGTTGATCGCTCCTATAGTTGCCTCGATGCCCGCCTTTATGATGACGAGACGTTGACAGTGGTGTTGCAGGGCCAGGACAGTGATGATAACAGGCTCCGCCTTCTTGCCCAGCTTCCCCTTGGCTCTGCCCTCAGATGTGAGGAAGGGTTTACGTGGGACCCCAGCCTTAGGCTGGATCAGCAAAGTGAGGGGATCCCCGCACAAGGGCTCACCTGGGGAAACCAAAGCCGAGATCTGGAGAATATGAAGGCCCAGTTTGTTGCTGTGAATGGCATCCGCAAAGTAGCTTGTGTGCTGAGCTCAAACCTGCGACACATCCGCGTGTTTGAGATGGACGTTGAAGACGAGGAGGATGAAGAACGGCCAGACGACTCACAGGACATCAGCTCCGATCAGGACGGTCTGGAGGAAACACAAGCCAATCGTGGAGCGACAGGAGCAGATGGAGACAAAAAGGCAGAGGCTTCTGGGGAAACAGGGGAAGAGTCAGGGGTCGCCCTGGAACAGACGTCAGCATCTGATACACTATGACCTTTCCCTCCCACTGGACTTTTAAACATGCCAACGTCTTACTTTGTGCAGACCAGTTGAGTTTCAGTAAACAATTTCAAGTATTTTTGTAATGATTGTACATCTGACTGAAACAAGTTCTGTTGTGATGTTCTGTTTTGAGAATAAAGTGACTTTTTTGAGCAGG

Function

GO:

id name namespace
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:0005680 anaphase-promoting complex cellular_component

KEGG:

id description
K03351 APC4, ANAPC4; anaphase-promoting complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40501 lncRNA upstream 136794 62928802 ~ 62929726 (+) False LOC103035278
TU40436 lncRNA upstream 222085 62821743 ~ 62844435 (+) False LOC103045797
TU40437 lncRNA upstream 261766 62803591 ~ 62804754 (+) True G30168
TU40399 lncRNA upstream 327608 62737567 ~ 62738912 (+) True G30138
TU40391 lncRNA upstream 414583 62649364 ~ 62651937 (+) True G30130
TU40572 lncRNA downstream 29880 63116862 ~ 63117415 (+) True G30280
TU40631 lncRNA downstream 52316 63139298 ~ 63142668 (+) True G30311
TU40634 lncRNA downstream 62684 63149666 ~ 63150215 (+) True G30314
TU40658 lncRNA downstream 176968 63263950 ~ 63288134 (+) True G30335
XR_002649739.1 lncRNA downstream 210881 63297863 ~ 63298732 (+) True LOC111191941
XM_007257009.3 mRNA upstream 125646 62935685 ~ 62940874 (+) True ttr
XM_022678418.1 mRNA upstream 135387 62926018 ~ 62931133 (+) True LOC103035278
XM_007257051.3 mRNA upstream 140715 62909091 ~ 62925805 (+) True LOC103046397
XM_022664239.1 mRNA upstream 140715 62918096 ~ 62925805 (+) False LOC103046397
XM_015607799.2 mRNA upstream 159004 62888868 ~ 62907516 (+) True LOC103046101
XM_007257018.3 mRNA downstream 998 63087980 ~ 63111659 (+) True slain2
XM_007257019.3 mRNA downstream 998 63087980 ~ 63111659 (+) False slain2
XM_007257020.3 mRNA downstream 1000 63087982 ~ 63111659 (+) False slain2
XM_007257022.3 mRNA downstream 1001 63087983 ~ 63111659 (+) False slain2
XM_007257023.3 mRNA downstream 1003 63087985 ~ 63111659 (+) False slain2
TU40444 other upstream 223477 62839235 ~ 62843043 (+) False LOC103045797
TU40175 other upstream 1130437 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 1369649 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 1373236 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 2623013 60430861 ~ 60443507 (+) True LOC111190190
TU40713 other downstream 248752 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 248752 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 248752 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 248752 63335734 ~ 63345693 (+) False G30362
TU40712 other downstream 248945 63335927 ~ 63345693 (+) False G30362

Expression Profile