RNA id: XM_007257023.3


Basic Information

Item Value
RNA id XM_007257023.3
length 3943
RNA type mRNA
GC content 0.49
exon number 8
gene id slain2
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63087980 ~ 63111659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTCTCTCAGTCCCCCTGGTGCTGCTCGGTAAAGATGGCGACGGAGCCGCCCGTGTGTGCGCGAGTCCGGCGAAGATGACGACGAGAAGCCGAGCAGCTCAGTTCTCAGGCGCCGCGTGGACAGTGTAGAGTCGGGAGACGCCCAGAGGAGCTGTAGAGGAGCTGTGAGCGCGGTGAAGCGGAGAGGAATCGTCCGGCTGTCGGTCTCCCCGCGCCTCCCTCAGCCGCCGACGCCGCGGGCTCGGCTATGGAGGACATCAACTCCAACATTAACGCGGACCTGGAGGTCCGGAAGCTCCAGGATCTGGTCAAGAAGCTCGAGCAGCAGAACGAGCAGCTGCGGACCCGCTCGGCGCTGCTGTCTTCCTCCGGGGCCGCGCCGGGATCCATCGGCAGACCGCTGAGCGCCGGCTACGAGTCCTCCGCGCTGAGCTCGGGCGCGGCGCCGGCGCTCTCCGGCTACGGCGGGCCGAGGGGCTTCAATTACGGGCTGTCGCTGGTGGAGAACTCGCGCTGCCTAAGCCCCCGGCACTCTTACCACGGATCTAACGGCCGCTACGACTGCGACACCACCAACAACAGCGGCGTCTCCTCGCGCTACCGAGACTCCGTGGTGGATTTGATGGAGGTGGGGGAAAGTTCAGTGCTGGACGAGGTGGAGATCCTCGACCTGGAGGACATGGACTGTCTGAACGAGGAGGAGGACAGCTGGTTGTATGAGGCCAAGCTGAACAGTCCTCTGCAGAAAGCACTCAGCCCCATCGTGTGGTGCAGACAAGCCCTGGACAACCCCAGTCCTGACATGGAGTCAGCCAAACGCTCCCTCCTACACAGATTGGACCTCACTATGTCCGCAAATAAGAGGAGGAGTCTGTATGGAAACACCTACAGCCCTCAGGTGGGCTATGGAAACCAGTACAGTCCAAACGCGTCGAATAGTCCGTACAGCAGCGGCTTCAACTCCCCCTCCTCCACTCCCTCCAGAGTGCCTATCGTCAAGCAACTAGTACTGCCTGGCAACGCGGgccatCAGCGGAGCTCGGACAGAAACCCTCCAGCAGTTAGCCCCCAGTCATCAGTAGACAGTGAGCTAAGCACATCAGAGATGGAAGAGGATTCTGTGGGTTCCTCTACCACCTACAAGCTCAATGACGTCACTGATGTTCAGATCCTCGCCCGCATGCAGGAAGAGAGCCTGAGACAAGACTATGCTGCCACAGCATCACGGCGCAGCTCAGGCTCTTCCTGCCAGTCTCTGCGGCGGGGAACACTCAGTGACCAGGAGCTGGATGCCCAAAGCTTggaggatgatgaggaggagATGCTTCACCCTGCACTGTATCACCCACCTGTGACCCGCTTCAGCCCGTCTCCTCGCCCCTCTCCCCGTGTCTCACCCCGCCACTCGCCACGCTCACGTTCCCCTGCACGCTCGTTGGAATATGTCCGAGCCTCACCACAACCAATGATCAGCCGCCTTCAACAGCCCCGCCTCTCCCTGCAGGGCCACGCCCATGAGCCGACTAATGCCATTAAGAACGAAGaAAAATTGCGACGGAGTCTTCCCAACCTGACTCGCTCCAGCTCCGGCCCTGCTGCTGAACCTGTCAAAAACAGCCGCAGCTGTGAGTCCAACCTGCAAGTGCCAAACGGATCCCCCCGACACCAGACGAGTCAGTCAGCCATTCCTTCCAGTAGTAAACTGAGGACTCCTGCTGCCCCCTCACCTCTGGCCCTGCGGCAGCCTGTAAAGGTTGTGTCTAATCCTAGTTCGGGCACATCCACACCGACTCGATCTCTAGCCCCGCCCCGCAGTGCTCTGCCCCGCCCTAGTGGCTCAGCTGGTGGGGGGTTACCTGTGCCTCGCAGCAAACTGGCCCAGCCAGTGCGcagGTCTTTACCAGCTCCCCGAAGCTACAGCGGCATCAGAGATGAGAGCTGGAGGGAGGGTTGCTACTGAGCATGCCCAGAAACCTGCAGCACAAAGACGGACTGTCCAACCTGGCACTTTACCGACctacataattattttttttttagattgcaCAATATCTGCAAGAGAGTCACTCTTAGCACCTCCATACAATCAGCAACATAAAGGAAATTCTCATCTCAGTGGGGTAGAAACATGGCTAGCTGGAGATCCGAGAATGCCAAAGAAACCAACTGCCACCAGGAGGCACTCTCACCAACTAAACAGAGCCTATACAGAGAACTGATTTAAACCAGTACCTGATATCTTTGCCTGAATGCCTActcactctatctatctctcattGAACCTGTGTTCTGACTTTTCACTGTTCCTCTCTGCTTCTgcaccccaaaaaaaaaaaaagcctggacTATCCTTACATAAATTTTCTCTGTAACGGGCCTGTTGCAATCCTGTGTGAGTGGAgtagtgttttttaaagttatataaTAGTTGTCCAAAATGCCGAGCTTGCTGGACACCCTTAAACAGTGGCTGTATGGACTGAATATGAATCCATGACAGTGTCTTTCTCCCAGAATGTCTTGTCATATCTATGtgacaattatttatttagagtcattatttaaaaatcttatTTCCAAAGTACAAAATATTCataatcagtatttttttcttaagttttgAATGTTAATGTTTAAACCTCAATTTAAAAGCTAAGTTTCCAAagcatttttcagtggattcaTGACGAAGCAACTGGatataacatttcattttatcactGTGTATCAATCCAGAACTATGAGATCCAAACCAgggttgttgtgtttttttttcttttcttttcttttttttatataatatgtttCAAGTGTAAACTTGTAGAATCATGGAGTGGTTTGCTGAAATACAGGAGGATCATCGATAGTGCTCTTTGTAAGATCAAAGCAACTTTTCccaaattgtgtgtgtgtatcatatCCCTATTTGGCAGTTGAACTATGGTAAACCATTAGATGTTAAacattaattgttaaatttggtggagaaaaaaaaaactgtaatttgtgCATAATCAAGCTTTGATGGATGACCGGTCCATTGGTCTGTTTCTGGCTCAGGGGAAGGGGTCATAAGATGACATTGTGATGTGTAGCGTGGTTGTACAAGTAACTGAAAATGTCTAATGAACAGCTGATCATGGAGTGTTATCTTTTTGTGGTTGTCCCCATCATCAGGTCTTTTAtggatttgataaaaaaaaagagagaaagaagccTTTCAGTGCATAAATGCATGTACATTGAGGTTCATGGTCCAGCAAAAGCACAGGAAACTATGCCTTAAAGGCAAAGCTTCAAACATCATACACTTTAAGCAAAGAAACCACACTGTTATTCCAGTGAGAGTCGCAGAGGAAACGGAAAATAGAAAGTGCTTGCCGTTGCTTGAGTGGCAGTGGCACTTCAGACGCATGCAGTAATGCGTCAGTAAGACTGCGAACGTTCGTTATAAACATGAGTGCCTATAAGTTATAAAATCACATGATTGCTTTTATGTCctcattattgtttttgtttttttttcgttcTGTATTTAATTTGGTGCCAACTGCGTTGTTTTGCCAATAATAATTGTTTGCTTCAGGGGTCGCTGCATTTCTTGCTTGATCTTTTTTGGCTAATGTATTATTTGGTTTTATATTTGCTTTGATAACATTTATATTTGCtttttggaacaaaaaaaaatgtatgttataAACGCCTTGATATTTATGACTAAATGCTCTGATCTGTTGAGAGGcttatttattaaacagagCGATGCCTCTGCACGGTGTGAGGCAGCGTCAGTGGGATGCCTGAGCCTTGTATAGGCATGAGGATGGTCATGCCACACCATTTTGTGGACAGTTTTgttaaaaaacttttatatcTCCACAGACATGATGCTCAGTTTCCCCTGTGTTAATtcacatttcaaataaaatgtgcaaaaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40501 lncRNA upstream 158259 62928802 ~ 62929726 (+) False LOC103035278
TU40436 lncRNA upstream 243550 62821743 ~ 62844435 (+) False LOC103045797
TU40437 lncRNA upstream 283231 62803591 ~ 62804754 (+) True G30168
TU40399 lncRNA upstream 349073 62737567 ~ 62738912 (+) True G30138
TU40391 lncRNA upstream 436048 62649364 ~ 62651937 (+) True G30130
TU40572 lncRNA downstream 5203 63116862 ~ 63117415 (+) True G30280
TU40631 lncRNA downstream 27639 63139298 ~ 63142668 (+) True G30311
TU40634 lncRNA downstream 38007 63149666 ~ 63150215 (+) True G30314
TU40658 lncRNA downstream 152291 63263950 ~ 63288134 (+) True G30335
XR_002649739.1 lncRNA downstream 186204 63297863 ~ 63298732 (+) True LOC111191941
XM_007257017.3 mRNA upstream 1003 63066520 ~ 63086982 (+) True anapc4
XM_007257009.3 mRNA upstream 147111 62935685 ~ 62940874 (+) True ttr
XM_022678418.1 mRNA upstream 156852 62926018 ~ 62931133 (+) True LOC103035278
XM_007257051.3 mRNA upstream 162180 62909091 ~ 62925805 (+) True LOC103046397
XM_022664317.1 mRNA downstream 11647 63123306 ~ 63131100 (+) True slc10a4
XM_007257025.3 mRNA downstream 21301 63132960 ~ 63134737 (+) True zar1
XM_007257027.2 mRNA downstream 178475 63290134 ~ 63295723 (+) True ociad1
XM_007257026.2 mRNA downstream 178475 63290134 ~ 63295686 (+) False ociad1
XM_007257028.3 mRNA downstream 196290 63307949 ~ 63314957 (+) True ociad2
TU40444 other upstream 244942 62839235 ~ 62843043 (+) False LOC103045797
TU40175 other upstream 1151902 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 1391114 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 1394701 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 2644478 60430861 ~ 60443507 (+) True LOC111190190
TU40713 other downstream 224075 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 224075 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 224075 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 224075 63335734 ~ 63345693 (+) False G30362
TU40712 other downstream 224268 63335927 ~ 63345693 (+) False G30362

Expression Profile