RNA id: XM_007257025.3


Basic Information

Item Value
RNA id XM_007257025.3
length 1258
RNA type mRNA
GC content 0.57
exon number 4
gene id zar1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63132960 ~ 63134737 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGCCGAGGCGTCCGTCGGCTTAGCGAAGAGAGAGAACATGGCTTCATACGGAGACGAGTCCCTCGACAGCTATCTGTACACCTCCTACAACCCTTACTCCTACAGATGCCCCAGGCCCAAGGGCTGGAGGCACAAGAGCTACCTGGCGGCGTACGGGGACAGCGACAGCTACCTGGACACCTACCACCGCGCGCAGCTCAAGTCCATCCTGTCCCAGATCAACCCCAACCTGACGCCCCGCCTCAGGAAGGCCAACACCCGGGACGTGGCCGTGCAGGTCAACCCCAGGGCGCACGTGTCCATCCAGTGCTCGCTGGGGCCGCGCACGCTGCTGCAGGTGCGCAGGCGCGACAGTCCGCGCGCGCGCAGGATTGACGGTCAGACCCCCGGCAGCCCCGGTTCCTCCAGCAGCGGCGGCGGGAGCCCGGGGGGCGTCCGGTTCCCGCGCACTCAAGCAGTGTACTCCCCCATAGCCAGCAGGGGCCTGGCCTCCTTCcttcaggaggaggaggaggaggaggaggaggagcgcaGGGGAGcaaaggaggaggaagaggagaaacagcagcagcaggagaacAAAGAGCGCAGGAGCTCCAAACAAGCCAAAGATGAGCTTAGTCCCGACAAAAGCATGGAAGGAAGTGAGCAGACTGGAGTTGTGGATGGAAGTAAGAGTGAGGCTGAGAAGAGTGGGCAGGAGGAGTCCAAGATCAAGGGCAGAGTGAGGTTTCAGTTTCTAGAACAGAAGTACGGCTACTACCACTGCAGAGACTGCAACCTGCGCTGGGAGAGTGCATATGTGTGGTGTGTTCAGGGCACAAACAAGGTCTACTTCAAGCAGTTTTGCAGAACATGTCAGAAGTCATTCAACCCATACCGTGTAGAGGACATAACCTGCCAAAGCTGTAAGAAGGCACGCTGCACTTGCCCTGGAACAGCACGTCATGTTGACCCTAAAAGACCTCACAGACAGGACCTGTGTGGTCGCTGTAAAGGCAAACGGCTCTCCTGTGACAGCACCTTCAGTTTCAAGTACATTATATAACCCTTGTGGTGGAGGTTCCTGCACTGCTGTTTTGCCCCACTGCTTGGCTGTGGGTCTTGGAATCAACAGCAAGCCTCAAGTGGCGAGACTAGTCCTTGTTAGAAGAGACCCAGGACAAGGACCTGAGCTCTGGGATTTGTTCATGTTGATCAGCAGGGTTTTGCAGGAACCACTTCAGAAAAGTGAAATAAAGGCAATAACAGCAATA

Function

GO: NA

KEGG:

id description
K18762 ZAR1; zygote arrest protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40572 lncRNA upstream 15545 63116862 ~ 63117415 (+) True G30280
TU40501 lncRNA upstream 203234 62928802 ~ 62929726 (+) False LOC103035278
TU40436 lncRNA upstream 288525 62821743 ~ 62844435 (+) False LOC103045797
TU40437 lncRNA upstream 328206 62803591 ~ 62804754 (+) True G30168
TU40399 lncRNA upstream 394048 62737567 ~ 62738912 (+) True G30138
TU40631 lncRNA downstream 4561 63139298 ~ 63142668 (+) True G30311
TU40634 lncRNA downstream 14929 63149666 ~ 63150215 (+) True G30314
TU40658 lncRNA downstream 129213 63263950 ~ 63288134 (+) True G30335
XR_002649739.1 lncRNA downstream 163126 63297863 ~ 63298732 (+) True LOC111191941
TU40763 lncRNA downstream 299094 63433831 ~ 63435982 (+) True G30383
XM_022664317.1 mRNA upstream 1860 63123306 ~ 63131100 (+) True slc10a4
XM_007257018.3 mRNA upstream 21301 63087980 ~ 63111659 (+) True slain2
XM_007257027.2 mRNA downstream 155397 63290134 ~ 63295723 (+) True ociad1
XM_007257026.2 mRNA downstream 155397 63290134 ~ 63295686 (+) False ociad1
XM_007257028.3 mRNA downstream 173212 63307949 ~ 63314957 (+) True ociad2
XM_022664352.1 mRNA downstream 183915 63318652 ~ 63334868 (+) False dcun1d4
XM_007257029.2 mRNA downstream 184519 63319256 ~ 63334868 (+) False dcun1d4
TU40444 other upstream 289917 62839235 ~ 62843043 (+) False LOC103045797
TU40175 other upstream 1196877 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 1436089 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 1439676 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 2689453 60430861 ~ 60443507 (+) True LOC111190190
TU40713 other downstream 200997 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 200997 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 200997 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 200997 63335734 ~ 63345693 (+) False G30362
TU40712 other downstream 201190 63335927 ~ 63345693 (+) False G30362

Expression Profile