RNA id: XM_007257035.2


Basic Information

Item Value
RNA id XM_007257035.2
length 1777
RNA type mRNA
GC content 0.51
exon number 4
gene id rasl11b
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63521545 ~ 63524944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCGGTTTGTGGGAGATCAGAACCGGAGTAAACAGCGGAGCTGAGCTCAAACAGAAGAACAGGAGCAGGGTTCAGACTGTAGAACAGATACACAGAGCTCTCACTGGAGTACCCGAGTCACTGACACCGCCGGACACACCAGAGACCCGCGTCTCCGAGCTCGACTCACCGACACCgtgtggatatatatatatatatatacatcgcCTAGAGTAGAGAGCCCGCGCGTTGTGTTCACGATGCGCCTGGTCCAGAACATGAGCACCATAGCGGAGTACCCCGCCGCCTCAGACTGCACCACCAGCCGCGTCCTCAAGATAGCCGTGATCGGGGGCAGCGGAGTCGGCAAGACCGCTCTTGTGGTTCGTTTCCTCACCAAACGCTTCATTGGTGACTACGAGAGAAACGCTGGAAACCTGTACTCCAGAGAGGTCCAGCTCGATGGAGACCAAGTGGCGATTCAGGTTCAGGACACCCCTGGAGTTCAAGTAAATGCCAACGGCCTTAGCTGCACTGATCACGTGACCCGTTCCATTCAGTGGGCCGATGCTGTAGTAATGGTGTACTCTGTGACGGACCACCGCAGCTTCGACCTAATCAGCCAGCTCCACCAGCTGGTAAGCAATGCCCACGGCGAACGCTCCAACATCCCGCCCATCATCCTGCTGGCCAACAAGGCAGACCTTCTGCATGTGAGGCGGGTAGATGCACAGCAGGGACCCCTCCTTGCCTCGGCGCTTGGCTGCTTCTTCTACGAGGTGTCGGCCAGTGAAGATTACAGTCAGGTGCATGGTGCCTTCCACAGGCTGTGCAGGGAGCTGGCCAAACAGCAGCCGCTGCCCTCCCAGCCGTCAGTGACTACTGTGGGGTCAGAAAAGAGGAGGTCTCCCCTCATCCCCAGACCAAAGTCACCCAACATGCAGGACTTAAAGAGGCGCTTCAAGCAGGCTCTTTCCGCCAAGGTGCGGACGGTGACATCCGTGTGAAGATTGAATATGGAGACTTGGCCTGGATGTGGGCCAGAGAAGACTGAAAAGCAAGAGGTCAATGGAGGGAGCTCAGCAGAGGACAGGAAGAGGAGGCTCAAAAAGCTGAAGCAGTGGTGAGTTTTCCACTTGTTCCTCAGAAGCTCGGTCGCTGATCAGCAGGCCACTTCCTAAAGAAGGTAGCTGAACTTTGACCTCCAAGCTCAACAGCCACTGTTGACCTTCGACTTGTGAACTTTCTTGCTGGTGGACAATCCACCTGTGCTGCTGTCAATCACGGAAGAGCAGATGCAGCAGGATGCTGGGAACAGGTGCCAGAAGCTGCCTTAAAATGGGAAGAATGCAAAAGATGCTCAAGACTGAATGAAAGTTAATGTACGCACACACTGCTTTATAACTGTGGACACTTCTCCTTGCAACAGGGCTTGTGAAGGACAAAGCTCTTGAGTATTTTTAGTGACTGTTATAAAAGGGGAGTGagtaattttatttcttatttttttttcttcagtcaaGGCTTTCACGCTCCCAGCAGAAGTGAACTGAAAGCGGGCATTGTTAAAGTGAGGCAGTAAAGTTTAAATGCACAAAACGTGTGTGCTTTgcttttcactcactcactcactgtgtaCATTTGTTGGTTCTGTGTAAAAATCGGATTAGTGCCaaattgtattttctttttctttctaaatgcactttaaatcaaGCCAAAGGGCTAAGGTTCATTATTTATTGGTTGCAGTCAAAAATACTGTGgttgagaaaaataaaactgtgtGAATGAATA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048382 mesendoderm development biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07853 RASL11B; Ras-like protein family member 11B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649180.1 lncRNA upstream 52794 63466243 ~ 63468751 (+) True LOC103041812
TU40768 lncRNA upstream 52928 63466275 ~ 63468617 (+) False LOC103041812
TU40763 lncRNA upstream 85563 63433831 ~ 63435982 (+) True G30383
XR_002649739.1 lncRNA upstream 222813 63297863 ~ 63298732 (+) True LOC111191941
TU40658 lncRNA upstream 233411 63263950 ~ 63288134 (+) True G30335
TU40773 lncRNA downstream 2577 63527521 ~ 63550200 (+) True G30393
TU40942 lncRNA downstream 732170 64257114 ~ 64269674 (+) False kit
TU40949 lncRNA downstream 781171 64306115 ~ 64306424 (+) True G30517
TU40981 lncRNA downstream 897557 64422501 ~ 64422895 (+) True G30539
TU40982 lncRNA downstream 898565 64423509 ~ 64425402 (+) True G30540
XM_022664370.1 mRNA upstream 142023 63365674 ~ 63379522 (+) False spata18
XM_022664364.1 mRNA upstream 142023 63365676 ~ 63379522 (+) True spata18
XM_022664352.1 mRNA upstream 186677 63318652 ~ 63334868 (+) False dcun1d4
XM_007257029.2 mRNA upstream 186677 63319256 ~ 63334868 (+) False dcun1d4
XM_007257030.3 mRNA upstream 186677 63321555 ~ 63334868 (+) True dcun1d4
XM_022664403.1 mRNA downstream 239825 63764769 ~ 63822100 (+) False fip1l1
XM_022664404.1 mRNA downstream 239825 63764769 ~ 63822100 (+) False fip1l1
XM_022664402.1 mRNA downstream 239826 63764770 ~ 63822100 (+) False fip1l1
XM_022664401.1 mRNA downstream 239827 63764771 ~ 63822100 (+) True fip1l1
XM_007257043.3 mRNA downstream 570706 64095650 ~ 64097660 (+) True gsx2
TU40713 other upstream 175852 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 1548657 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 1549627 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 1550172 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 1573558 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 1574347 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile