RNA id: XM_007257043.3


Basic Information

Item Value
RNA id XM_007257043.3
length 1601
RNA type mRNA
GC content 0.58
exon number 2
gene id gsx2
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64095650 ~ 64097660 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAACAGTCGTTGCTGTGAATGAGCCCTGAGTCCAGACGGGCAACACTCTGATTGGTGGGGAACGCAAGCATCACGTGTCTGGGGTCACCGGCGCAACTAAAGGCGCAGCGCCGGGAGCGCACGTGGGGCTGTTTGGGCCGGCCCCTTTGCGGGCTTTCTTTTGTTGAAGCATCAAACATAAGCACCTTCCCTGCGCTCCCGAGGGGTTAGAACGGAACACTAAGATCCTGCGAGCTCCGCAATCTGCAACGACAACTCGGGCACGAGCAGCATCCAAGCATCCAACATAACCAtcattagcagcagcagcagccgcagcAACAGCTCTATCTCCATCTCCAACTCCATCTGCGTGTTTCCATCACCTCCTCATCCCCTCACGCGCGCTCCTGGATCCATCATGTCCAGGTCCTTCTACGTTGACTCTCTCATCATCAAGGACCCCGCGCGGCCCTCAGTCCTGAGCGAACGCCTTGCGCACGACTTCCTCTTCCCTGTCGGCGTGCACGCGCCGGGCGCAATCAGTGTGGGCGCGCCTACGTGCCCGTCGCGCAAAACCGGCGCTCTGTGCATGTGCCCCCTCTGCGTGGCCACGCACGTACATGTGCCGCCGCCGCCGCGCTCTGGCGGAGGAGCCCTCGCGCTCCTCAAGGCTCCTCCGGGCTTCGGGAGCGCCGACGCGCCGCCTTGCTGCCCTAGGCTCGCGCATCACCATCAGCATCAGGGTCCTGCGCTCGCGCACGCCGCCCACGGACACGCGCCCGTGTGCGCACCCACAGCCTACGGCGTGACGGACCCACGGCGCTACCACTGCGTGACCCTCGGCGCATCTGACAGCAGTCCCGTGCAGGGTGGCAAGCGCATGCGCACGGCCTTCACCAGCACTCAGCTTCTGGAGCTGGAGCGCGAGTTCTCCTCCAACATGTACCTGTCGCGCCTGCGCCGCATCGAGATCGCCACGTACCTGAACCTGAGCGAGAAGCAGGTAAAGATCTGGTTCCAGAACCGCCGCGTCAAGCACAAGAAGGAGGGCAAGGGCGCGCAGCGAGGCGCGCACGGAGCCTGCAAGTGCACGGGCGTCGGCGGCGGCGTGCACGGGCACGCGCATTACCCGCGCTCGGAGGATGAGGAGTCCATGTCACCCGGgtcaaccacggaggagaaaGAGGCGTCGCCCGTTTAACGGTCTGGCAGACTGACGGAATGGACTGTGTTCACACCGAGCAGCACTTAGTCTCTCAGAGGAATCCCAGCGTGTCCAAACCCGGTAGATTCAGGAAAGAAAAGTGGATTTGGTTTCTCTGTTTCCTAAGACTGTTTTTACGCAAACAGttgaaatctgtgtgttttcttcATGCATCCTTTTCTACCTGATTCGTGTTTGAAACGTGTTTGTTTATGCGCGAAACTGTTGCATCTTGTAAATACGCCCACTTTGGGGGTGGTGAGGGTTTGTGTTACATAACTAAGAAACTGTGATTTAGTTCTGTTTTCCTTCTCACCTGAATTTTATGTGCATTGTATGCAGaatgtgtatatttgtatatttatttaaataaaaggaaaCTTCATAAGTGCGTCATTACGCACAACCCCGCAA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09310 GSH; homeobox protein GSH

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40773 lncRNA upstream 545450 63527521 ~ 63550200 (+) True G30393
XR_002649180.1 lncRNA upstream 626899 63466243 ~ 63468751 (+) True LOC103041812
TU40768 lncRNA upstream 627033 63466275 ~ 63468617 (+) False LOC103041812
TU40763 lncRNA upstream 659668 63433831 ~ 63435982 (+) True G30383
XR_002649739.1 lncRNA upstream 796918 63297863 ~ 63298732 (+) True LOC111191941
TU40942 lncRNA downstream 159454 64257114 ~ 64269674 (+) False kit
TU40949 lncRNA downstream 208455 64306115 ~ 64306424 (+) True G30517
TU40981 lncRNA downstream 324841 64422501 ~ 64422895 (+) True G30539
TU40982 lncRNA downstream 325849 64423509 ~ 64425402 (+) True G30540
TU40985 lncRNA downstream 357114 64454774 ~ 64456432 (+) True G30543
XM_022664403.1 mRNA upstream 273550 63764769 ~ 63822100 (+) False fip1l1
XM_022664404.1 mRNA upstream 273550 63764769 ~ 63822100 (+) False fip1l1
XM_022664402.1 mRNA upstream 273550 63764770 ~ 63822100 (+) False fip1l1
XM_022664401.1 mRNA upstream 273550 63764771 ~ 63822100 (+) True fip1l1
XM_007257035.2 mRNA upstream 570706 63521545 ~ 63524944 (+) True rasl11b
XM_007257058.2 mRNA downstream 4621 64102281 ~ 64104332 (+) True LOC103022002
XM_022664435.1 mRNA downstream 14059 64111719 ~ 64144324 (+) True pdgfra
XM_022664441.1 mRNA downstream 133584 64231244 ~ 64269695 (+) True kit
XM_022664446.1 mRNA downstream 133584 64231244 ~ 64269695 (+) False kit
XM_022664448.1 mRNA downstream 133584 64231244 ~ 64269695 (+) False kit
TU40713 other upstream 749957 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 975941 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 976911 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 977456 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 1000842 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 1001631 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile