RNA id: XM_007258180.3


Basic Information

Item Value
RNA id XM_007258180.3
length 2478
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC103034955
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58282590 ~ 58317479 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACACACTCCTCTGACTCTGCCTGCTCTCATTCAGTTGCACTTCAGTTCACCACTCCAAACCTGCAGAGAACAAACCTCTTCTCTGATCACTTCGAGTCCACTGGCTGTGGACTGAGAGGTGGAGTGAAGAAGAGAGGGaagaataaagagaaagaggagacaAATAAAGGAGACAagaggaaaaaacaaggttCTGTCAGAGATGGGAGGAAACGAGAAGAAAATTAACCAAGTTGTGGACAGGAGTGCTGGAGAAAGGGAGACTGAGTGTGGTTGTTTAaaagcagaaaacactgaatcaCTGACCGCCGCATGTCTGAGTGGTCGATCAGCAGATGAAGATGGGTTTACAGGTACGGGGTCGAGTGCAAACCGCCTGGCTTTCTTCAGACACCTGGAGCGTGTGGAAACTCTGCGCTGCTACTGGGAGCTCAAACATGTTGAGTTAAAAAGCAAGGATGGTGTGGAGAAGCCAAAAGTATGCTTAAAAGGGCTGAAATcccagaagaagaaaaagcctCCAGATGTAGCAGATGCCGCACAGACTGACTTGGAGGAAGTACAAAAGCTGAACCAGCAGAACGCTGAGCTTTCTCATGGCACTGCTGAGACTGCTGCTTGTGCAGCAGAGCATCTGGACTTCATTAAAGATGAGCAAGAAcctgaagagaaaaagagagaggaactgCAGGCAGTGGAACAAAAAGAGGAAGCAGAGAAGGATGAGCAGAGGGAGATTAGCAATGAACAAGATAAACAGGAGACAAAAAGACCAGAGGACCTGTGTGTTCCAGATGTGCCCAGATGTGAAAGCAGTGCTGTCTACCAGGAAAGctcTGAAGAACACTGTGAGTTGACTGGCAGCACTAAGAGACGAGTCACAGAAGAGAATCTGGAAAAAGATGACCTTAAAAAGAGCAGGGTGGAGCAGAGGTCAGAGGAGGTGGAGGGAAGTGAGGAACAGAAGTCAGAGGATGATGCTGCCAAAGAGGGAACAAAGGAACCAGAAGAACCAGAAGGGgagaagaaagaaggagagacaaTAGCTGAAGAGTACATAATTGATTGCTCGCCTCCACCTCCTGCACCTTTTGAGCACCGTGTGGTGACATCAAAAACCCAACAGATAACTGCATACTACACCATCAACAGAGAGGAAGTGCTTGGAGGTGGGCGTTTTGGAATGGTGCACAAGTGTGTGGAGAAGTCTTCTGGTCTCACATTGGCAGCTAAGATCATCAAAGCCAGAAGTCAGAAAGAAAAGGAGGTGGTAAAAAGTGAGATTGAGGTTATGAACCAGCTGAATCACGCTAATCTAATCCAGCTTTATGCAGCTTATGAATCTCGCTATGATGTCACTCTTGTGATGGaatatgttgAAGGAGGAGAGTTATTTGACCGAATCATTGATGAGAACTACAAACTAACAGAGTTGGACACAGTACTGTTCATCAGGCAGATCACTGAAGGACTGCAGTACATGCACAAGATGTACATCCTGCATCTCGACCTGAAGCCAGAAAACATACTCTGCGTGAGTCGAGAAACAAATAAAGTCAAGATCATTGACTTTGGCCTGGCGAGAAGATATAAACCAAGAGAGAAGCTGAGGGTGAACTTTGGTACACCCGAGTTCCTGGCTCCTGAAGTGATCAACTATGAATTTGTCTCCTTCCCAACAGATATGTGGAGCTTAGGAGTCATTACCTACATGCTGCTAAGTGGTCTGTCCCCTTTCTTGGGTGACGATGATAACGAGACACTGAACAACATCTTGGAGTGCAAATGGGGCTTTGAGGAGGCAGAGTTTGAAGACATCTCTGAGGAGGCCAAAGACTTCATTAAACGCCTTCTTGTTCAGAGCAAGGGATGGAGGATGAGTGCGTCTCAGTCACTGAAACACCCCTGGCTGTCGGACCGATCACTACACTATCGTCTCCATCAGAAAAAGAACAAATGCCACTCCACCCGAGCTCCTCCTCCAGAGAGCTGAAACAGACGGTGCCCTTTATCCTCCTGGAGCCAGGAAGTCAAACTGGACCAACTACATACCTGAACTGCCACCCAGCTGCTATGTATCCATGATTAGCTATTACAGAACAGAGGTAGCATAACTCATGTATGCTTTGAATCCACAAATAAGattatgttataaaaaaattgtagaTGATACAGAGCCCAGAGTCCACACTGTCAGGTCACACTATACTTCTGGCAACAGATATTAATGTCTGATATACAggaaatatatttctttatagcTTACAGTGTTACAATTGCTGTATCTGTCATACGCACAACTCTAAAACAGTACAAAAGCCACCATTTATTTAAGTCTTATTAATGTCATATTAAGTATTGTGTTTGGTTGCTTACATTGTGATATTTATAAGGCATGTAAAATGttgaacattttgtttttactgtacCAGTATTGTGTATACTTAAGAAATGAACACAGAACAATGTACTGTCA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K00907 MYLK; myosin-light-chain kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39028 lncRNA upstream 19009 58263198 ~ 58263581 (+) True G29071
TU38977 lncRNA upstream 137773 58142873 ~ 58144817 (+) True G29033
TU38984 lncRNA upstream 154230 58127862 ~ 58128360 (+) True G29040
TU38980 lncRNA upstream 163449 58115985 ~ 58119141 (+) True G29036
TU38971 lncRNA upstream 206060 58060925 ~ 58076530 (+) True G29029
TU39133 lncRNA downstream 80189 58397668 ~ 58398075 (+) True G29150
TU39136 lncRNA downstream 86874 58404353 ~ 58404651 (+) True G29152
TU39140 lncRNA downstream 129425 58446904 ~ 58447361 (+) True G29156
TU39141 lncRNA downstream 130890 58448369 ~ 58448640 (+) True G29157
TU39179 lncRNA downstream 200197 58517676 ~ 58517898 (+) True G29191
XM_007258183.3 mRNA upstream 21149 58247781 ~ 58261441 (+) True LOC103036000
XM_022663582.1 mRNA upstream 21149 58247781 ~ 58261441 (+) False LOC103036000
XM_022663577.1 mRNA upstream 21149 58247781 ~ 58261441 (+) False LOC103036000
XM_007258196.3 mRNA upstream 147137 58086509 ~ 58135453 (+) True LOC103039449
XM_015608112.2 mRNA upstream 147137 58086515 ~ 58135453 (+) False LOC103039449
XM_007258179.3 mRNA downstream 3556 58321035 ~ 58385520 (+) False gmds
XM_007258178.3 mRNA downstream 3557 58321036 ~ 58385520 (+) True gmds
XM_022663632.1 mRNA downstream 140475 58457954 ~ 58480787 (+) True exoc2
XM_007258170.3 mRNA downstream 187323 58504802 ~ 58508475 (+) True LOC103031977
XM_022663662.1 mRNA downstream 486768 58804247 ~ 58819777 (+) True LOC103021664
TU38889 other upstream 470102 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 880198 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1883149 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1979380 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 2042861 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 99915 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 880723 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 903053 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 910589 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 910832 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile