RNA id: XM_022663577.1


Basic Information

Item Value
RNA id XM_022663577.1
length 2118
RNA type mRNA
GC content 0.40
exon number 14
gene id LOC103036000
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58247781 ~ 58261441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGAAACATGACAAACTGCTGGAGGTGTACTGTCGTACTGACCAGAAGTGCATCTGCATGATGTGTTTAATGGATGACCATAGAGGACATGACACTGTTTCATGTGCAACAGAACGGGAGGAAAAAGAGGTCGAAGTgaagaccataaaaaaaaaattgaggaaaaatgcaaagaaaaagagaaagagcttTGTGAGCTGCAAAAGGACATTGAAAGTCATGTAAGCTCTGCACAGCAAGCAGTCAAGGACACTAAAAAAGCCTTTAAGGAGTCCATCTCTCTCATTGAGAAAAAATGCTCTGAGATAATCGAGGTGATCAGAGCTCAGGAGAAAGATGACCTGGACAGACTTGGAGATGATCGAGAACAGCTGGAGCTGGACATCGCAAAGCTGAGGGCACAGGGAGATGTACTTGACAAGTTTTTACAGAAAGGGGACGTTTACTTTCTTCAGAATTGTGGCAAAATGCCCAATCCTTCTGATGATGAAGATTGTTCCGCTCAGTCAAAAGACCTAATCAATTCATTTAAGAATGTGAGCAAAACAGTTTCTGAGTTTAAAGATAAACTGGAGGTCTTCTGCAAACAGGAAGCAGATGACATTGTAAACACAGATTTAGCAACAAAGACCAATCTAGACCTGGATCCCGATTTCCTGTTTAAGATTGGAGACAAAGTTTGTGTGAGGTCTTCTGTGAAAACACCAAAATTTAACTGGGGTGCTCATGTCACCCATAAGAGCATCGGTGTAGTCAAAGCTGTTCATGGTGATACACTGTTTGTCAACTTTCCTGAACATAAAAACTGGAAGGGAGACGTCTCTGAGCTGGAGCTAGTAACCAATTCCACTGAACAAGAAGCCTCAGCTCAGAACAATAGCATCAAGGTTGGAGATCAAGTCCGGGTGAAGCCTTCTGTTGACACTCCAAAACACAAGTGGGGAGGAATTACTCACCAGAGTGTGGGCACTGTTAAGACTATTGATGGTGAAGCCCTGACTGTAGACTTTCCGGAGTATTCTGGCTGGCGTGGCATAGTGCCCGAGATGGAAGTGGTACCTGCTGATGATCAGGTCTCAGCTACAAACTGCAGTTTTAATGTTGGGGACAAAGTCAGAGTAAAACTCACAATTGTGACTCCAAAACACCAGTGGGGAGGCGTCACTCACAGGAGCACTGGTACAGTTACAGGTACTAAAGATGATCTTGTGACTGTGGACTTCCCCGAATGTAAAGGCTGGAAAGGTCTCTTATCAGAAATGGAACTAATATCTATCACAGACAGtaaagCATGCTTCAAGATTGGAGATCGGGTGAAAGTAAACGCCTCTGTTACTAATCCGAAACGTGGATGGGGAGGTGCCAGTCACAAGAGTGTCGGTGTGGTTGTAGCTGTTAATGGGGAAAGTATAACTGTCGATTTTCCTGAGCATAAATCTTGGAACGGTACAGTTTCAGAAATGGAGCTGGTTTCTGGTGCTAACTCAGAGCTCTGTAAGTTTAACTGTGGAGACCGAGTACGGGTAAAATCCTCAGTAAAAACTCCAAAATACAACTGGGGATCCATCAGTCATAAGAGTGTGGGCACAGTCAAAGCTCTTAAACTGGTGGTGGACTTTCCCGAACAGTCTAACTGGTCTGGTGATCCAAAAGAAATGGAAGTGGCACCGTAGAAACTGAGGAAAGAGCTCCAGGATCAAATCTCAGGAATTTAATGtcatatttaaagtaatcaGAGATAAACTTACATTACCTGTGTTTTCTACTGATTCTGTGCATTAGTTATAATAAGTGaatgttattattaaagaaaCCAGCAAGTCTTAGAATTACACACATTACCATCTTTCTATATGTTAAATTGATTAATGTTAATCAAACACTATGTTTTATACCTtgcaacataaaaatattatgCATGTCATGTAAACATTagaattaattgtatttaaaatatttatcaatGTGTTTGAATTAGTTTGCAACATCAGGAAATTACatattggtttgttttctttgcaaagcACTGATAACTGTCAAAACTGAAATTTACTCAAATATCTCTTCTTTTACTTGTGGTatgaatggaaataaaaacaaattcttTCATCAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38977 lncRNA upstream 102964 58142873 ~ 58144817 (+) True G29033
TU38984 lncRNA upstream 119421 58127862 ~ 58128360 (+) True G29040
TU38980 lncRNA upstream 128640 58115985 ~ 58119141 (+) True G29036
TU38971 lncRNA upstream 171251 58060925 ~ 58076530 (+) True G29029
TU38941 lncRNA upstream 336188 57911326 ~ 57911593 (+) True G29003
TU39028 lncRNA downstream 1757 58263198 ~ 58263581 (+) True G29071
TU39133 lncRNA downstream 136227 58397668 ~ 58398075 (+) True G29150
TU39136 lncRNA downstream 142912 58404353 ~ 58404651 (+) True G29152
TU39140 lncRNA downstream 185463 58446904 ~ 58447361 (+) True G29156
TU39141 lncRNA downstream 186928 58448369 ~ 58448640 (+) True G29157
XM_007258196.3 mRNA upstream 112328 58086509 ~ 58135453 (+) True LOC103039449
XM_015608112.2 mRNA upstream 112328 58086515 ~ 58135453 (+) False LOC103039449
XM_007258194.3 mRNA upstream 167072 58078488 ~ 58080709 (+) True LOC103038833
XM_007258200.3 mRNA upstream 195988 58003247 ~ 58051793 (+) True LOC103040480
XM_007258203.3 mRNA upstream 278899 57920735 ~ 57968882 (+) True LOC103041400
XM_007258180.3 mRNA downstream 21149 58282590 ~ 58317479 (+) True LOC103034955
XM_007258181.3 mRNA downstream 33567 58295008 ~ 58317479 (+) False LOC103034955
XM_007258179.3 mRNA downstream 59594 58321035 ~ 58385520 (+) False gmds
XM_007258178.3 mRNA downstream 59595 58321036 ~ 58385520 (+) True gmds
XM_022663632.1 mRNA downstream 196513 58457954 ~ 58480787 (+) True exoc2
TU38889 other upstream 435293 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 845389 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1848340 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1944571 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 2008052 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 155953 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 936761 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 959091 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 966627 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 966870 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile