RNA id: XM_015608112.2


Basic Information

Item Value
RNA id XM_015608112.2
length 2145
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC103039449
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58086509 ~ 58135453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCCAGCTCCAGTCCGAGCGTAGACTGACCAGAAATACAGGAGACACATACCAGCACCTGCATTCTGGCTCTGCTGCTGTAAGCTAAGCCCCAGTTGCAGAGATGCAGACATTTGGGAGAGGAAAAAGAGTGGGATACTGGCTCAGCGAGAAGAAAATCAAGAAGCTGAATTTCCTCACCTTCGTGGACATGTGCAGGAAAAGGGGCATTGAGATGGTGCAGCTGGACCTCAGCCAACCTCTGGAGGAGCAGGGCCCCCTGGACGCCATCATCCATAAACTGACTGACCACATCGTGGAAGCGGACCAGAATATCACAGAAGCCTTATTGCTTGTGCAAAGTGTGCAGGAATACATTGATGCCCATCCGGAGACTGTCATTCTAGACCCTCTTCCTGCCATTCGTACTCTGCTCGACCGATTCAAGTCCTACACGCTAATCCACAAAATAGAGGAGAGCATGAAGGATGACCGGATTTGCTCTCCTTCGTTTATGGTGCTCAGCAATGAGTGTGGGCCAGACATGCTGGAGCAGCTCCATGTGAATGGCATCACCTTCCCCTTCATCTGTAAAACCCAGGTAGCACATGGCACTAACTCCCATGAGATGGCCATCATCTTTAGTGAGGAAGACCTGAAGGACATCAGGCCTCCATGTGTAATCCAGAGCTTCATCAACCACAATGCTGTGCTTTACAAGGTCTTTGTAGTGGGTGAAGCCTACAGTGTGGTGGAACGTCCCTCCATCCGGAACTTTCCCTCCGGACCCACAGaTAGAAGAGCCATATCCTTTAACAGTCATCATGTGTCCAAGGCTGAGTCCTCATCACACTTGACTTCTAGGGAAAACTTGGAAGGCCAGTGCAGGACGCCTAGTAATGATGTCATTCAGAAAATTTCCAGGTGCTTAAGACAGACGCTCGGAGTGTCTCTGTTTGGGATCGATATCATCATCAACAACCAAACAGGCCAGCATGCTGTAATCGACATCAATGCATTTCCagGTTATGAGGGTGTTCCGGAGTTCTTTGATGACCTGCTAGCTCACCTCACTAACATCCTACAAGACCACTTACCTGGAGGACCCCTGAGAGTGAACGGCGTGGCTCAGAGCTTGCCTGTGGCCTGTGAGGTTTCCTGTGGGAGCTGCTGGGTGATAGACAGCGAGGGAATGAAGAAAGACTCCCATCAGGGCCTGAGCTGCTGCAACTCTGACCTAGCCCCAAAATACCAGCACCACTGCAGGTCCACGCTCGCAGCCGAGGCACCTTCACAGTGACCCCACGCTCCGCTCCAGAGAATTAGCCTATTTAATTATTCTTAACAAATCAATTACACCCTTCTCCAAGCTGAGTGGGGCCGAGAATATTTCTCTGTGCCAGTTTTATGATCCGTAGTGCGCAGACAATGACCAAAGATGTACtgattttgtagatttttttttcttggggtTAAAAAGGAGCAATCAGTATCTTAAATATGAATGTgatttagttttcatgcatcttgcacAAGTGCCTTAGGGAAATTGTTTCTACACTGCTGATTATGGGAGATGTAAGAGAAGTTGAAATGAACTGGTAAGTAATACGAACCTAATGATCACGTGAATACTGAGGCTATTCACTCCTACAACTCCCAGCAGTCATACACAGTCATGTGAAGTGATACACATCATGACTCAGAATGTGGAGGCAATACAGTGTTTTGAATGTACTATATAGAACACTTGCTCAATACAGAATTCTTATTGAAAGGTTATATGACCCTTAATCAAATTACCCTTTATTGGTTTTCTATTTAAGTTGTTAGATGAGCATCCTTTTCAGAAAACACAATCGTGCACATTTTGatgtttatttgcttaatttaatatatttggaaatatattttatgttaagtttagcagagaaaacagaaacagagtaACAGAAATACTGTTATACTTAAGTGTGTTTCCTGTGTCGGACATATTAACTTATTTTCACTCTGAAAATCAACAAAGCGTGTAATTTGAACTGGGGTGTCCAGACGTTTGCATATGGCAGTACCTCATATAAGGACTTAAGATTTACATGCTGTGAAATGAGCAACAGTTGGGTGCATGATATGAAATAAAGCTCACAGGATTACTGTAAAAGTGTA

Function

GO:

id name namespace
GO:0032957 inositol trisphosphate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity molecular_function
GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0047325 inositol tetrakisphosphate 1-kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38971 lncRNA upstream 9985 58060925 ~ 58076530 (+) True G29029
TU38941 lncRNA upstream 174922 57911326 ~ 57911593 (+) True G29003
TU38881 lncRNA upstream 295564 57790251 ~ 57790951 (+) True G28955
TU38783 lncRNA upstream 570210 57450210 ~ 57516305 (+) True G28872
TU38767 lncRNA upstream 688294 57397948 ~ 57398221 (+) True G28864
TU38977 lncRNA downstream 7420 58142873 ~ 58144817 (+) True G29033
TU39028 lncRNA downstream 127745 58263198 ~ 58263581 (+) True G29071
TU39133 lncRNA downstream 262215 58397668 ~ 58398075 (+) True G29150
TU39136 lncRNA downstream 268900 58404353 ~ 58404651 (+) True G29152
TU39140 lncRNA downstream 311451 58446904 ~ 58447361 (+) True G29156
XM_007258194.3 mRNA upstream 5806 58078488 ~ 58080709 (+) True LOC103038833
XM_007258200.3 mRNA upstream 34722 58003247 ~ 58051793 (+) True LOC103040480
XM_007258203.3 mRNA upstream 117633 57920735 ~ 57968882 (+) True LOC103041400
XM_022663460.1 mRNA upstream 196692 57878155 ~ 57889823 (+) True LOC103047227
XM_007258183.3 mRNA downstream 112328 58247781 ~ 58261441 (+) True LOC103036000
XM_022663582.1 mRNA downstream 112328 58247781 ~ 58261441 (+) False LOC103036000
XM_022663577.1 mRNA downstream 112328 58247781 ~ 58261441 (+) False LOC103036000
XM_007258180.3 mRNA downstream 147137 58282590 ~ 58317479 (+) True LOC103034955
XM_007258181.3 mRNA downstream 159555 58295008 ~ 58317479 (+) False LOC103034955
TU38889 other upstream 274027 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 684123 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1687074 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1783305 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 1846786 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 281941 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 1062749 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 1085079 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 1092615 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 1092858 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile