RNA id: XM_007258203.3


Basic Information

Item Value
RNA id XM_007258203.3
length 2167
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC103041400
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57920735 ~ 57968882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGCAGCTGTAGCGCTGTGAAGAGGAGAGTCCTGACTGGACACTGTGTGTGCTGgggtccacacacacacacacacacacacacacacacacatcttggGAGAAGAAGCGTCGATGGCACACATCGCTCGCTCACACCTCAGGAGAGCGCCGCTGTTTTTCTGCACGTGTTGGTCCTGAGCTCAGCTCAGGTGTTCTTCTTCAGAAAGTAGCTCCTCTGAGGAGAGGCGCTTCAGCTCCACAGCGGCAGCGTCGATAGGGTATCTAACTTTCGACCCCCTCCAGCCTCTCCAGCCCACCGGCAGCACTACACAGGCGGCTGGCGGGAGATGCAGCCTGACCGAGGGGCTGCAGCGCGCAGGATTCCGGCTCGGTCTCGCGGGCTGGAGGAGAAGTTTAGCTCGAGCCTGAAGCGGAGCGGCACCGCGCCGCAGCAGCACCAGCTCCAACTTTAAGCCCCAGCCCGCCGAGCTCCTCCACCGGACCCACACCGCCGCTCTGGGCTCTTCATGCCACCCACTAATGAGATAACTGGGCAGGAATGTTCAGAGGACCACGCGGCCACGAGCTCGAGGGCACAGTTGCCGTTCAGCGCGAGAgaccgccgctgctgctgctgccggacCGCCGCTAAATCTCCCCTCAGCAGAGAGTTCCTCTCCAGGTGGACTCTGAACACACAGGAGGAATGTTCACCCACAACCTGCCGGCGACCACGCTGGGGGTCCTGCCTTTTCTCTTCAACCACTGCTTCCTCTCGCTCCTTCTCCTACAGCATGCCCAGGGAGAGCTCCAGAAGTCATGCTCTCGGACCTCAGCAGAACCAGTGGAAGGGGTCTGCAAGCTGCCATGCCAATGCAAACGCTACCCACCTTTacccccacctcctcctccaccaccaccacccagacTGCTCTCTCCTACTGtgGCTCCAGCTACTGTTCCACCTATGAAGCCCTGGGGAAGAGAGGTGGAGATTTTGGTGCTGGGGACAGTGATCTGTGCCTCAGTAGTCTTCCTTCTCCTGACAGGCATCATTTGCTACAAGGCTATTAAAAGGAAACCATTGCGGAAAGAAGAGAACGGCACAAGCCGAGGAGAGTACGCCATGAGCTCTCGCTGCACGCAACAGGTGGTGGAGACCAACAACACTGGAGTATAGTACTCAGAGCAATTCAGTGGAACACTGTAAACACTCCTGATCCCACCACACCATCTCTTTCTTCAGGCTTTGAAGGGGTTTGGAGATGGATGAGAGGTAGAGAGTGAACTTTTGAAGGAACTTAAAACCGTAGCTCTGCCTGTGTGGGAGATGTGAATactttaaacagagaaaaaaacacttaaatgaCAAACAAGTGCTGGTAATGATTGACGTATGACAGTACACTAAAAGGTTCAGAGAAGGCATGGAGCCCAGAGACTCATTGTTATGTTGGACGAGATGACAGCTGTCAGTATCCCGAGGCTGAAGCTGTCAGGCCCTGAGACACCTCAGAGCCTCCTCGGAGGACAGCGTACCAGTAGACCAACAACGAATCAAACGCATGCACTTTCTGTTGAATGCAATGACGTCTTAAGATTCCTTCCTTTCTCCGCtctcctctctgtctgtttccCCGCAGTTTCCTCCCTCCCCACCTCATGTAAATAAAGAAGGCTACGTTGCTTCGTGAGCGAGCGAGTCCAGATCGAGCAGACGCAGATGGTGCTCCAGCTGTAAGCTAAAGGAGGAACCAGGAAATCGATCCCTTTTTTGTATGACTATGCAACTGGAAAGGTGGTGCAtgttcatgatattaaaaaaaaaaccacaacgTTAGCATCATTTGCTGCTAATCAGCATTGCTAATTTCTAATATGGATTGGACAGTCTGAATTACTCGCTCTAATCACTGTACATGTGGAATTGACTAATTCAGCTGTAATTGCTTGTCATCAGTAAAGAGGCACGAATCAATGTCACACATACATCAATTAAAGACTGTTATTTAACTAGGGCTACATCATCATGCAAGgacaagctctctctctctcttttaattttagctctgttattttattggTCATTGTATTTGATTGCATAAACTAAACCACTTTCACACTTTTTGTCATTATGTAGTAAATCCAGTAAATCCACCATGAGATTAAATCTGTTAAGATCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38941 lncRNA upstream 9142 57911326 ~ 57911593 (+) True G29003
TU38881 lncRNA upstream 129784 57790251 ~ 57790951 (+) True G28955
TU38783 lncRNA upstream 404430 57450210 ~ 57516305 (+) True G28872
TU38767 lncRNA upstream 522514 57397948 ~ 57398221 (+) True G28864
TU38728 lncRNA upstream 802012 57118496 ~ 57118723 (+) True G28833
TU38971 lncRNA downstream 92043 58060925 ~ 58076530 (+) True G29029
TU38980 lncRNA downstream 147103 58115985 ~ 58119141 (+) True G29036
TU38984 lncRNA downstream 158980 58127862 ~ 58128360 (+) True G29040
TU38977 lncRNA downstream 173991 58142873 ~ 58144817 (+) True G29033
TU39028 lncRNA downstream 294316 58263198 ~ 58263581 (+) True G29071
XM_022663460.1 mRNA upstream 30912 57878155 ~ 57889823 (+) True LOC103047227
XM_022663465.1 mRNA upstream 30912 57878163 ~ 57889823 (+) False LOC103047227
XM_022663451.1 mRNA upstream 45343 57859082 ~ 57875392 (+) True LOC103041704
XM_007258204.3 mRNA upstream 45343 57859082 ~ 57875392 (+) False LOC103041704
XM_007258209.3 mRNA upstream 65612 57848467 ~ 57855123 (+) True LOC103042834
XM_007258200.3 mRNA downstream 34365 58003247 ~ 58051793 (+) True LOC103040480
XM_007258194.3 mRNA downstream 109606 58078488 ~ 58080709 (+) True LOC103038833
XM_007258196.3 mRNA downstream 117627 58086509 ~ 58135453 (+) True LOC103039449
XM_015608112.2 mRNA downstream 117633 58086515 ~ 58135453 (+) False LOC103039449
XM_007258183.3 mRNA downstream 278899 58247781 ~ 58261441 (+) True LOC103036000
TU38889 other upstream 108247 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 518343 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1521294 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1617525 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 1681006 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 448512 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 1229320 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 1251650 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 1259186 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 1259429 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile