RNA id: XM_007258209.3


Basic Information

Item Value
RNA id XM_007258209.3
length 2805
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC103042834
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57848467 ~ 57855123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATCATGAAATCAAGCCATCTCCGACCTCAGTAGATAAGGAATGTACACAGAGCCACACAGCACACAAGGGAAGACGGCTACACGACTGTGATACCTACACAATTTTGATATTTAGAAAGggaGATTATGGCAGCAGCCAGGGTATCAGTGCCTGGCATGGGCACTGCAGTCATGGACACAGAAGACTACAGTGCTTACGCAAACATGACTGATGACCAGCTCCTGCAGTTGGCTATCGAGAGAAGTCTAGCTGAAACAAACTCGACACCCAGACAGAACCAGGCTTTCTGCTCCAACATGCAGCCACTAGACCGCTATTCACGTGTCAGGCGGCCTCAAAACTTCCCTCCACGTGCAAACCCTTCTGCAAACCCACCAGCAAACCCACCTGCAAACCCACCAGCAAACCAACCAGCACACCCACCTGCAAACGCCTCTGCAAATCCTCCCATTGAGAAAAAGTGTACAAAAATCAACAGAGATGCTCAAAACCATTACTTCAGCAAAGACAATAATCAGGTAGTCGCCTGGACAAGACACAATGGATTCCTGCGGGTTACAGTGGAATCTGCCAAGAATTTGGATCCTTTTCTCGCAGCTATTTGGAATGGTGATGCCAAGGCTTTAAAAGGCTTAATACAAGCAGCATCTAAAAACCTCACAGAGCCTAATAAAGAAGGTTGGCTACCTCTCCACGAGACTGCATATTACGGCCATGTTGAATGTCTGAAGGTTTTGCTGCAAGCTGAACCGCAGACCATTAACATTCGCACTCTCAAGAACCAGACTCCGCTGATTTTGGCTGTAGGCCGCAAACATCTGTCTTGTGTCCAGTTCCTTCTGGAGAAGGATGCTGATCCCAACCTGGCAAACAACCAGTGGGAGACCCCGTTATACAAAGCTTGTGAAAAGGGCTTTGAAGACGCAGTGGGGCTCCTCTTAAGATTTGGAGCATCAACAACAAAGTCCTGTGTTCAAGGTGGAACTCCGCTACATGAGGCAGTGAGGCAAAAGAACCTGGAGATTTGCAAAATGTTGCTTCAAGCCGGAGCTAAGATAATGGCTAAAAATATTTATGGCATAGACCCTGTGtttactgcagctcagtgtgGGACAACTGACGTGCTTAACTTCCTGCTTATGAAAGGGGGAGATGTAAACACTGCGGCTAATGATGGCGCTACAGCTTTGTTTGAAGCTTCAAAGAATGGTCATGGTGAAACTGTGCAGATGCTTCTGTCAAGAAGAGCTGATGTTAACAAAAGTAACAAAGCAGGACTGCTTCCCATTCACATTGCTGCTAAGAATGGACACGATGGGATTGTTGCCATGCTGATACCCATAACTAGCAGAGCCAAAGTAAAACGGTCTGGCATCAGTCCTCTCCACCTGGCAGCAGAGCGCAACAGGGATGATGTTGTTGAGATCCTGGTCGACGCTGGTTTTGATGTCAATGCCACTCTGTCTAATGATTGGTCCAAAATGTATGAGGATCGCCGCAGCACTgccctgtactgtactgtagccAACAGTAATATTGAGGCAGCTAGCATGCTCCTGGAGGCTGGTGCAAGCCCAAACCTGGACACCTTCAACCCTCTGCTCGTTGCTGTGAGGAAAGGTTGTATGGAAATAGTCCAGCTGTTGGTCAAACATGGCGCTAACGTTAACGCTATTCTCCCAACGCACCCGACAAGCTTCCCAGCTGCTCTGATTTTCTGCTTGAAGTATCTGCCCATGTTTAAGTACCTAATGGACAATGGCTGTGATGCCCTGTCATGTTTTAAGTGTGATTATGGCAGCGATCCTCATCCACCCATCAAAACCAGAAGGACTGGAAGGGAGGGGTTGTTTTGTGCCTTTGATGAACTTACAGAAGGCACTGTGCAGTTCTGTGAGATTGTCTCCAGCCCCTTAGTCAGCGGTTGGGCAGGACCCCTCATAGACATTCTGCTGGACTATGTGGgtaatgtgaaaatgtgttcTAGACTCAATGAGCACCTAGAGAGCTACATAGATTGGGCACACATCAAAGAGAAATCAATGCTTCCATGCACCTTAATGCATCTCTGCAGACTGAAGATTCGCAAGTGCCTGGGAATGTACAGACTGCAGAGGATCAGTAGCCTTCCACTACCTGGCAGACTCATGAAGTTCTTAAGGCATGAGCGAGAATCATTTAGAGATATTCTGTAAATTAAGAGTAAAAAGACTTAAGATACATTAAATGGTCTTtttctttgctgtttttagaaCATGTTGTTTTAGTGGTTTCACTGGTTTTGTcaataagatatttaaaaaaatagtgcaTACATTTGAATATATATGTGTAGGAATATGCAAAACTCTCATATTTTACAAGATGACAGCTATTTTCTACTTTAATAGCAACTTACTCATCATAGCTGCAGTTTAGTGATTACTGGAAAATGTAAAGATGATAATTTCACTTCAttattgtacaaaaaaagacAGCTAAAAAAAGGATCAATAGAAGCTCACACAGTATACAGGTATGtaaacatttatacatattCAGTATCCATGAATGAAGTTTATATGCAAAAATGACATAATATTTGaacactgtgcattttttttatataattgtagAATTATAATTTCCAGGCTGctgaaagaaaaacagtatcagtcaaaagtttggacaccttctcattcaatgtttttctttctatattaatttattgattttctacattgtagattaatattaaaaacctgAAAACATTTAAGTTACACATATGTGGAAAAAGTGTCCTACACAattccctgacctaaac

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38881 lncRNA upstream 57516 57790251 ~ 57790951 (+) True G28955
TU38783 lncRNA upstream 332162 57450210 ~ 57516305 (+) True G28872
TU38767 lncRNA upstream 450246 57397948 ~ 57398221 (+) True G28864
TU38728 lncRNA upstream 729744 57118496 ~ 57118723 (+) True G28833
TU38711 lncRNA upstream 837748 57010477 ~ 57010719 (+) True G28822
TU38941 lncRNA downstream 56203 57911326 ~ 57911593 (+) True G29003
TU38971 lncRNA downstream 205802 58060925 ~ 58076530 (+) True G29029
TU38980 lncRNA downstream 260862 58115985 ~ 58119141 (+) True G29036
TU38984 lncRNA downstream 272739 58127862 ~ 58128360 (+) True G29040
TU38977 lncRNA downstream 287750 58142873 ~ 58144817 (+) True G29033
XM_007258205.3 mRNA upstream 36280 57802891 ~ 57812187 (+) True LOC103042006
XM_022663418.1 mRNA upstream 47596 57795392 ~ 57800871 (+) False LOC103043365
XM_007258210.2 mRNA upstream 47596 57795899 ~ 57800871 (+) True LOC103043365
XM_007258223.3 mRNA upstream 60432 57778205 ~ 57788035 (+) True LOC103047529
XM_007258218.3 mRNA upstream 410452 57433154 ~ 57438015 (+) True zbtb25
XM_022663451.1 mRNA downstream 3959 57859082 ~ 57875392 (+) True LOC103041704
XM_007258204.3 mRNA downstream 3959 57859082 ~ 57875392 (+) False LOC103041704
XM_022663460.1 mRNA downstream 23032 57878155 ~ 57889823 (+) True LOC103047227
XM_022663465.1 mRNA downstream 23040 57878163 ~ 57889823 (+) False LOC103047227
XM_007258203.3 mRNA downstream 65612 57920735 ~ 57968882 (+) True LOC103041400
TU38889 other upstream 35979 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 446075 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1449026 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1545257 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 1608738 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 562271 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 1343079 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 1365409 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 1372945 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 1373188 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile