RNA id: XM_007258215.3


Basic Information

Item Value
RNA id XM_007258215.3
length 4159
RNA type mRNA
GC content 0.50
exon number 30
gene id LOC103044195
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57450925 ~ 57490723 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTCGACACTGGTCTCCCCTATCACACTGGGTAGTAGAAGTGTTCCTCTGCAGTCTGTTAAGCTTGTTTCTTCAGTAATAATAGTGCGGAAAGAGTGAAACTCCCTCCTCAGCGGTTGGACAGCAGCCAGTAGTGTACAGGAGGCCGTCCTTCACGTGCTGCCTGCAGTAGCAGAGAGGGGGCGGGGCTGTTCAGCAGAGTCCACAGGACCAACCTGCAGCTGATCTACAGCTCATACCACTGAAACCCAGCCAGGCCAGGCCCCGCCCAGTCCTCCGGACACGCCCCCTCACAAGCAGACATGTTCTTGAGAAACTGAGCAGGTTGCAGCAGTGAAAAAGGAAAGCGATATGAAGCGTTCTGGAATACAACTCACTACAAAGATCCAGGGATTCCTCTCGCACAGCTCAAcagctctctgattggctgagagtgAGCCAGTCTGGACCTGCCCACTTCCCCTACTCCAGCGGTGGCAGTActgcttttttcctctctctgtttttggCCCAACCACAAGGGTGTGTGAGCCTGCCTTGGCCTGAACAGAAGTCTTTTATTTACTGCTTTCCCAGGCTGTCCGGAGCAAACTGGTATGCTGCGGAAAAAGCCAGAGATAGGACCCCAGCCAGAGGCCTGGCAGTCTTCACCCacacaggaggaggaggaggagaagagagcTGTGTAGAGAGGAAAGAGTGACATTACAGGCTCCTAGAGTCAGTCAACTACACCACTGCACAACACTCTGAGGGGCTCTGAGAAGaaaCTTACCCTTACCCTGCTGAATACTCCAGCTGAAGACCAGCTGTAGCTGCTTTCAGATGGCCTAAGCTGGCTTCAGTGGTCAAACTGCTTGAAAAGCCAGTGTTCCAGACGAAAACATAGCCTATGCTGGGCAGCTAGACATGCTAACTCTCACTGCTGTGAGGCTCCGATATGGAGCACTAAAATGCTGGGACAGTCAgcgcaccatagcaaccatcatcTCAGGCAACAAGATATCACAACAGGTGAGGGAGCAGCTGAAGAAGGATGTTGCTGAGATGAAGAGTCAACTGCCTGGCTTTAGACCAGGCCTAGTGGTGCTACAAGTTGGAGACAGAGACGACTCCAACCTCTATATTCGTATGAAGCTGAGGGCAGCAGCTGAGATTGGAATTAATGCCAGCCACATCAGGCTTCCAAAGACTGCCACAGAAGATGAAGTACTACAAACTATAGAACAGGTAAATGAAGACCCAGCTGTCCATGGTCTCATCATCCAGTTGCCACTGGACTCAGTCAACCCCATTGATGCAGATAAAATGACCAATGCTGTGACTCCAGAGAAGGATGTCGATGGTCTGAGCAGTATAAATGCAGGGAAGCTGGCTCGTGGAGATCTGAGGAGTTGCTTCATCCCCTGTACTCCTAATGGCTGCATGGAGCTCATTAAGCAGACAGGTCTGCAAGTGGCCGGCAAGATTGTGGTAGTCGTTGGGCGCAGTAAGATTGTTGGAGCTCCTATGCATGATCTCTTCTTGTGGAACCATGCAACTGTGACCAGCTGTCACTCCAAGACATCAGACCTTGCTGAACAAGTGAAGAGGGCCGATATCTTGGTGGTGGGCGCTGGAAAGGCAGAGCTGGTGAAAGGTGATTGGGTGAAGGAGGGTGCAGTGGTCATTGACTGTGGCATCAATTACATCCAagACAGCAGCAAGCCAGGGGGGACACGCGTCGTTGGGGACGTACATTACCCTTCAGCTAAAGAGCGGGCCGGATACATCACCCCAGTCCCTGGAGGAGTGGGGCCTATGACTGTTGTCATGCTGATGGAGAATACAGTCCAGAGTGCTAAGCATTTTCTGCAGATGTACACAGGGAAGTGGAAGATTTCCTACAGAAAAGCCAAACCTCTGAAACCTCAGCCAAGTGATTTCCAGATCTCTCACTCGTGCCAGAGAAAACCTATAGCTCAACTAGCCAAAGAAGTGGGTCTCTTCTCAAACGAGGTGGAGCCCTATGGCAGGGCAGGGGCGAAGGTCCGAGTGGACGTCTTAAAACGCCTGAAGAAACAGCCTGATGGGAAACATGTGGTGGTCACCGGAATTACACCTACTGTGCTTGGTGAAGGCCGGAGAACCATCACTTTTGGGTTGGCACAAGCTTTAGGAGCCCATCTGAATATCAATGCTTTTGCCTGCTTGCAGCAACCCTCCCCAAAATCAAGTTTTGATCTCAGGGGTGGTGTTGTTGGAGGTGGATATTCTCAGATCATTCCCGCAGGGGAGGTCAGTCTTCAGTCCACAGGAGATATTGAGGCTGTTTCTGCTGCATGCGACCTCGTCATAGACACCATCAAAGCATACGCCCACTACCAGACTAAATACTCAGATAAGGTTTTATTTGACCTACTGGTGCCAATCAGAGATGGTCATCAAACCTTCTCAGCATCTCAGATCAATAGATTAAAGAGACTAGACATCGAGACATCTGATCCCTTAACCCTGACTGAAGAAGAGATGAGGCGTTTTGTCCGATTGGATGTTAACCCAGACTCCATGCAGGATGCTAACTTCCTGAAGGATGAAATCATGGCTATACTGTCTCTGAGCAGCAGTGCAGATGACCTGAAACACAGGCTGGCCAGGATGGTGGTTGCTGCCAGCAGATCTGAAGAGCCCATCACCACTGAGGACCTGGGTGTTAGTGATGCCTTAGCCCTGCTGTTGAACAATGCTCTGAAACCCTGTCTGATGCAAACGTTGGAGgGGACTCCAGTATTTGTTCACAGTAGTTCATGTGCTGATTTCACCCTGGGCAGTGCATCCGTCATGGCAAGCAAAATAGCTCTAAAACTGGTGGGCCCACAGGGCTTTGTTGTCACAGAGACTGCACACGGTGCTGACGCCAGCTTGGAGAAATTCCTCAACATCAAGTGCCGCTCTTCAGGCCTGCAGCCAAATGTGGTGGTGCTAGTGGCCACGGTCCGCGCCCTCAAAATGCACGGGGGTGCCCCACGGGTCACAGCAGGCTTTCCCTTACCTAAAGAGTATTCAGAAGAGAATCTGAAGCTGCTGGAGAAAGGCTGTGCTCACCTAAAGAGACAAGTTGAGAATGCCAGAGAATATGGTTTGCCTGTGGTGGTGGCTGTCAACGCCTTCAGTTATGACAGAAAGGCAGAGCTGGATCTGGTGTGTAGTCAGGCGAGACAGGCTGGGGTGTTTGATGCAGTGCTGTGCACTAACTGGTCTGATGGGGGCGCTGGAGCACTGGACCTGGCAAAGACTGTTCAGAGGGCAGCAGAGCTACCCAGCCAATTTCATTACCTCTATGACCTGCAGTTGCCGGTTGAACAGAAGATTGAGAAAGTGGCACAGCAGACATATGGTGCTAAAGATGTGAAGCTCTCACCAAAAGCCAAAGAGAAGCTAGCACTTTACATGAAGCAGGGCTTAGCTAACTAtccagttagcttagctaagacCCACTTATCCTTAAACAATGATCCCAAGTTTAAGGGGGAGCCCACAGACTTCACCTTGCCTATCTCAGACGTCCAAGCCTATGTGGGAGCTGGCTTTCTGTCCCTTCTTGTAGACAGGAGAAATGACTGTACTGAAGATGAAGATCCCATGTGGCCCTGTTTTCatggcaacaatgacctgtatAGTAACAGCAAGTAGCTTCATTTTATGAGGATGATACCAACACTGGGAGGGTGAAGGCTGCCATGTGCTTTACAATCCTTTCCAACTACTGCTAATGCAATTTCGTCAGACAACTCAGTGCTTTGGAGAAGAATGCTAACTGCTAATTTTGTGACACCAGCTAACAGGCAGCTGTTATGGCTAATATTGAGCTGAGAGATGGGGAATGGAAGGGTCATCCTTCTTActtgaagaaaaaaagattGTTTGTACTTTCTTGGACTTCTACCAGGGATCAGACACTTTATTAGATCAGAGTTTCAGACGTTGTAAAGCAGCCACTGCTATTCTGAGGGCCCTGTCTTACACCTTGCACAAGGCATGTTTCGATGCTCATTGCTGTCTCACACCCTGTCAGTAATCTATTTTTATGCCTTGCACCTGcaccatttaaatagcaacagagcttatgaatatatctacactgatgggcgtagTGGTCTCGAAAtaagatgtgttcagg

Function

GO: NA

KEGG:

id description
K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38712 lncRNA downstream 440218 57010477 ~ 57010707 (-) True G28823
TU38701 lncRNA downstream 625924 56824696 ~ 56825001 (-) True G28813
XR_002648824.1 lncRNA downstream 836858 56588694 ~ 56614067 (-) True LOC111189610
TU38563 lncRNA downstream 941237 56487213 ~ 56509688 (-) True G28728
TU38478 lncRNA downstream 1211202 56232707 ~ 56239723 (-) True G28657
TU38861 lncRNA upstream 272778 57763501 ~ 57764257 (-) True G28938
TU38885 lncRNA upstream 307368 57798091 ~ 57798381 (-) True G28959
TU38886 lncRNA upstream 308339 57799062 ~ 57800871 (-) True G28960
TU38914 lncRNA upstream 346913 57837636 ~ 57841087 (-) False ppp4r4
TU38907 lncRNA upstream 347224 57837947 ~ 57841288 (-) False ppp4r4
XM_007258216.2 mRNA downstream 4590 57440671 ~ 57446335 (-) True LOC103044876
XM_022663385.1 mRNA downstream 19270 57425305 ~ 57431655 (-) True zbtb1
XM_007258220.3 mRNA downstream 66259 57379813 ~ 57384666 (-) True vrtn
XM_022663361.1 mRNA downstream 224838 57218910 ~ 57226087 (-) True LOC111189704
XM_007231505.3 mRNA downstream 598495 56839749 ~ 56852430 (-) True dll4
XM_007258212.3 mRNA upstream 117047 57607770 ~ 57655080 (-) False LOC103043676
XM_007258211.3 mRNA upstream 117047 57607770 ~ 57655080 (-) True LOC103043676
XM_022678382.1 mRNA upstream 194769 57685492 ~ 57753143 (-) True LOC111194372
XM_022678386.1 mRNA upstream 321539 57812262 ~ 57841318 (-) True ppp4r4
XM_007258202.3 mRNA upstream 500918 57991641 ~ 57995472 (-) False LOC103041090
XR_452898.2 other downstream 756800 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 1634327 55815872 ~ 55816598 (-) True G28536
TU38270 other downstream 1844039 55602870 ~ 55606886 (-) True G28501
TU38271 other downstream 1844643 55602870 ~ 55606282 (-) False G28501
TU38134 other downstream 1949165 55499900 ~ 55501760 (-) False LOC111189318
TU39086 other upstream 678598 58169321 ~ 58174704 (-) False LOC111189852
TU39330 other upstream 1442240 58932963 ~ 58934789 (-) True G29317
TU39539 other upstream 1946877 59437600 ~ 59438298 (-) True G29478
TU39714 other upstream 2666815 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 2878323 60369046 ~ 60369614 (-) True LOC111191938

Expression Profile