RNA id: XM_007258218.3


Basic Information

Item Value
RNA id XM_007258218.3
length 2359
RNA type mRNA
GC content 0.50
exon number 3
gene id zbtb25
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57433154 ~ 57438015 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atagaatGGAGAagcaacagaaaaagaaagagggataACAAAGATAAAACTTCACTAAATTGTAGCTACAGGTTTATAACTAACTTTGTTGTGTGACTTTGTAGCTAAGTTCTCTTGTGAGGAATAagtcagttccaccttaaacatgACTAGAGTAagtgcactatttaaggtggaacggacaatTCCTGTAAAGAGATTTGCTGAGTGAACGatatgctagctagctatcatTCTCCACCATGCCAGCTAAAGCTAGCTATGTAGGGGAagctacatttttttcttttttttgcatgcgTGCCTCTCGCCATGCGTTGTGTCTGCATCTGCTAATGTACGGTCACGTGACAGAAGAGCCCGAGCAGAGCCTGTCCGTCAGACGCATAGGAAGCAGCACGAGCGCGTCCCTGCAGCAGCACGCGCCAgctaataatcataataatactaatagagCCGAGCGGTTCTCACGCACGTAGGCGggCATTGGGCTAGTAGAGGGGGCATCATGGACGTGTCTACCCACAGTCTGTTCCTCCTCCAGCAACTGAATGTCCAAAGAGAGTTTGGTTTCCTGTGTGATTGTACCGTAGCTATTGGCAATGTATACTTCAAAGCCCATCGAGCAGTGCTGGCTGCCTTCTCCAACTACTTTAAGATGATCTTCATCCATCAGTCCAGTGAGTGCATAAAGATCCAGCCCACTGATATCCAGCCAGATGTCTTCAGCTACCTGTTGCACATCATGTACACAGGCATGGGCCCTAAGCAGCCTGTGGATCAGAGCAGGCTGCAGGATGGCATCAAGTTCCTTCATGCATACCAGCTGTGCCGGAAGGCAGGTGAAGGCGGTCCTGACGCTTCCTCCGATGCCATTCGCATGTCCAACCTGTACGGCATCCAGATCTCCTCCCAGCTGACCACTAAAGAGTCGTCAGGCCTGAAGGCTGCCAGCACCTCACGAGATCCAGAAGATGGTCGCTCCAGTGCTCGGGCCGAGCGTGCTCTTGCAGGCCGACCTGCTCTTGCTGTGGGTCTTGAAGGACTTCCAATGGATCGCCAATCCCGAAGCCTCCGCGGGGTCTCCTCTGTGGCGTCGGGTGACGATTCAAATTCTATTTCAACCAGGATCAAGCAGGAGAGGGTGGAGGAGGAAGAGCAAGAAGAAGGGGAGGAGGAACACCAGGCGTCTGGCTCGCTCCCCTCAGCCAGGGGCAGCCCTTGTCAGATGGCTCTTTTCAAGGATGGTCCTTTGGCACTGCTGTGTCCTCGATGTGGCGCGCGGTGCCTGTCACCGGAGGGCTTGCAGGAACACCTTTTCAGTCATGCTGCCTGCACCCTGGAGCCCTCTATCAGCAGCTTGATGGAGGGGGGGCCCTCTGAAGATGGTGTTGGAGATGCCAGGGGACCAGAAGACAGGCGGGCTCAGAATGATCGCGTGGACAGAGGCACTTTAGAGGAGGCCTTGCGGCAAAGCCAGGCACTTGCTGACGAGTTGGCAGCAGAGTTGAAGCGAGGGGCCAGTAGCCCGACAGCAGGTTTCACCCGCAAAAGGAAAATGGCCTGTGCTGTGTGCAACCTGCGCTTCTCCCACAAGAGCCAGCTGCAGGAGCACATGTTCGCCCACGTGGGTAAGCCCCTGCGCTACCACCGCTATGGTCGCTTCTGTGGCCAGCTCCTGCATGGCTGCGAGGGAACACCAGACATCGCAGCCGTGGCCACAGCAGCTGAGGAGGCCATCCGGGACACTCAGGACAACGGCAGCTCCTGCTACTCGCTGGACTCGGAGGTGTCTCAAGAGAGTGTAGATGCTGTGACTGTGCAGTGATGCTCTGCTATTCAATGGACCTTTGCACTGACTTGCAGTCTCTACTCGTGGAAGATGTTCTTCAGCTTTGACCTCAGACACACTCTTTTCTTGTCCTGTTTCATACAATTTCCCCCTTGTTTGAGTTCAAGAAGTGCTGTTTCTAAAACCCCTGTGTTGACGAGTTCAGTGttggtgtattttttgtgaatGTAACTGAGCACTGCTTGACTGATGAGCCAGatgttgtgttttgtattttctaagAGTGTTACGACTGACACTGCACATGAAACTAATCCAGCTCAGACAATGAATTTGAAATCGAGCCAAACTGTGCTAGCAAACAGCTACATAAGTGCAGAACTGTTTTATGAATGTTTTGCAGCCAATTCTGATTCCTGAACAGTCCACCTTAATCCAAAAGAGCCCATACCCATTTCTGAATCATACTACAAATTTCTAAATTAAATTGGTAAACgtccattaaggattatattttctgtgatatattttctatttatatatgatCAGGATGTACTATCATTTATT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10504 ZBTB25; zinc finger and BTB domain-containing protein 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38767 lncRNA upstream 34933 57397948 ~ 57398221 (+) True G28864
TU38728 lncRNA upstream 314431 57118496 ~ 57118723 (+) True G28833
TU38711 lncRNA upstream 422435 57010477 ~ 57010719 (+) True G28822
TU38693 lncRNA upstream 603137 56829621 ~ 56830017 (+) True G28807
TU38691 lncRNA upstream 608155 56824688 ~ 56824999 (+) True G28805
TU38783 lncRNA downstream 12195 57450210 ~ 57516305 (+) True G28872
TU38881 lncRNA downstream 352236 57790251 ~ 57790951 (+) True G28955
TU38941 lncRNA downstream 473311 57911326 ~ 57911593 (+) True G29003
TU38971 lncRNA downstream 622910 58060925 ~ 58076530 (+) True G29029
TU38980 lncRNA downstream 677970 58115985 ~ 58119141 (+) True G29036
XM_007258219.3 mRNA upstream 25761 57405751 ~ 57407393 (+) True LOC103045802
XM_022663365.1 mRNA upstream 148370 57215344 ~ 57284784 (+) True LOC103046620
XM_022663335.1 mRNA upstream 613718 56767269 ~ 56819436 (+) False ino80
XM_007258223.3 mRNA downstream 340190 57778205 ~ 57788035 (+) True LOC103047529
XM_022663418.1 mRNA downstream 357377 57795392 ~ 57800871 (+) False LOC103043365
XM_007258210.2 mRNA downstream 357884 57795899 ~ 57800871 (+) True LOC103043365
XM_007258205.3 mRNA downstream 364876 57802891 ~ 57812187 (+) True LOC103042006
XM_007258209.3 mRNA downstream 410452 57848467 ~ 57855123 (+) True LOC103042834
TU38768 other upstream 30762 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1033713 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1129944 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 1193425 56232739 ~ 56239729 (+) True LOC103029514
TU37650 other upstream 3053848 54378241 ~ 54379306 (+) True G28072
TU38889 other downstream 371980 57809995 ~ 57812488 (+) False LOC103042006
TU39139 other downstream 979379 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 1760187 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 1782517 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 1790053 59228068 ~ 59228699 (+) False LOC111194375

Expression Profile