RNA id: XM_007258975.3


Basic Information

Item Value
RNA id XM_007258975.3
length 1812
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103038926
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51455657 ~ 51460083 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTGCGGTTAAGGCGACATGCTGTATAATGGGGTGACGGCACGTAGGAGGGATTATTCATAGCGACACTACCTGCCTTGTTCTGCTCTGGATTTTCACCACTGCTTTCTGCAATAACAATGAACGGTGAATATGATTATGAAAGTGAGCCAACACAAGCCTGGACATCACCACCAGACTATTTGTCTAATGAGACAGAAGACTATGAGGCGGGTTTCTGTCAAAAGAGATGGGTCAGGGACTTCCGTGGCTCCTACGAACCCCTCCTCTATTGGTCCATCTTCGTGGTAGGAGGTGTGGGCAACCTGCTTGTCGTGTGGATCTACACCACCGTCAAACACCGCCTCAAGACCATGACCGACGTCTACTTGCTCAACCTGGCCATCGCTGACCTCTGCTTCCTGGGTACCCTGCCTTTCTGGGCCACAGACGCCACCCAGGGCTGGGTGTTCGGCTCTGTCGTCTGCAAGGTAGTCTCTGCCGTCTACAAGATTAACTTCTTTGCCAGCATGCTCCTGCTCACCTGCATTAGCGTGGACCGCTACATCGCCATCGTCCGCGTGACCCAGGCCCAGAACTTCAAGAGCAGGCGGATGTTCTACAGTAAGCTGGCCTGTATGGTTGTGTGGTTGCTCTCTTGCCTCTTGTCTCTGCCTGAGTTTCTGTTTGCTGAGGTTAGGCAAAGTTCAAGCGGTGATTCTTGCAGCCTGGTCTATACCGCCAACAACAATAACCTCACCAAAGTCCTGGTCCTGTGCCTGCAGATCTCTATAGGCTTCTGTCTTCCTCTGCTGGTCATGGTGGCCTGCTACTCGGTGATCATCCGCACTCTGATGCAAGCTCGCAGCTTCGAGAAGCACAAAGCTCTTAGGGTCATCTTTGCCGTGGTGGCGGCATTCGTGATCTCCCAGCTGCCATACAACAGTCATCTGGTCGTAGAAGCGGCGCAGGCTTACAACACAACCATGACAGATTGCAAGACCGTTATAGCCTTTGACATTGCGGGTCAGATCGTGAAGAGTTTGGCCTATACGCACTGCTGTCTGAACCCTATCCTGTACGCTTTCATCGGGGTGCGCTTCCGGAAGGATCTGTTGCACCTCTGCCAGTGCTTGACCAGGATGGGTGGCATCAACAAGCTTCCAGCGGTTCCCAAGAGACCTTCTGTCATGTCTGATACGGACACCACCCCTGCACTGTCTTTGTAACCTTCTAGTGTTAACCAATGACGTACTAAGCAGTTTCCAGTTCATATACTCTCTTCAGAGGCTGGACAGTCACCAATAACCGTTCACACAACATACGCCTTATAACTCCATCCACATATACAGCATATATTCATTCTGCTCTCTTTTCACACATTACAGAAACAGAACTTCTGATATAGGACAATCTCTCAGCAGCAACCGCAGCATGTTATCTCAGACATCATATCCAAATAAGCAACTTTCTTCTGCAAAAGTAGGCTAGAATAAGCTTTAAAGACACTTCCTGAATATTTGAGGTATTGAGAAATGCTTGTATAGTAGTTTTcatcataacaaaaaaaaaaagtatgtctaATATATCTCATAACAGTTATGTGTCAATTCAATGAGATTATTTCACATCAAACTGGATAAAACAAGTAGTTAGtctcaaaatataaaatataaaaaatataaatggatTGACTTGATGACATCTACAATTGTTCCGGGTTTAAAGAttgtatatttatgtaaatatgtgtaaagaaaaagttgtgtttttttttattaattctttttGTTTGATTTACACCTATtctcaaataaaatacaatgaaaaaca

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36958 lncRNA downstream 270415 51184728 ~ 51185242 (-) True G27523
TU36936 lncRNA downstream 411450 51039630 ~ 51044207 (-) True G27504
TU36934 lncRNA downstream 424356 51029156 ~ 51031301 (-) True G27502
TU36887 lncRNA downstream 483001 50954618 ~ 50972656 (-) True G27461
TU36879 lncRNA downstream 569761 50885531 ~ 50885896 (-) True G27454
TU37063 lncRNA upstream 300841 51760924 ~ 51761490 (-) False G27619
TU37065 lncRNA upstream 300841 51760924 ~ 51761490 (-) True G27619
TU37067 lncRNA upstream 325979 51786062 ~ 51789157 (-) True G27621
TU37070 lncRNA upstream 382851 51842934 ~ 51844943 (-) True G27623
TU37073 lncRNA upstream 439464 51899547 ~ 51900123 (-) True G27626
XM_022662267.1 mRNA downstream 34265 51245789 ~ 51421392 (-) True gli3
XM_007255210.3 mRNA downstream 277306 51174484 ~ 51178351 (-) True pnrc1
XM_022662505.1 mRNA downstream 281267 51149463 ~ 51174390 (-) True pm20d2
XM_007255208.3 mRNA downstream 614681 50779334 ~ 50840976 (-) True ankrd6
XM_022662381.1 mRNA upstream 5201 51465284 ~ 51481876 (-) True LOC103045300
XM_022662384.1 mRNA upstream 5233 51465316 ~ 51481876 (-) False LOC103045300
XM_007258977.3 mRNA upstream 24685 51484768 ~ 51495272 (-) False lztfl1
XM_007258976.3 mRNA upstream 24685 51484768 ~ 51495272 (-) True lztfl1
XM_022662440.1 mRNA upstream 804965 52265048 ~ 52272380 (-) True LOC103029105
XR_001518286.2 other downstream 715223 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 915985 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 915985 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 915985 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 924018 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 1326389 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 1326389 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 2162193 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 2590678 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 3096863 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile