RNA id: XM_007258976.3


Basic Information

Item Value
RNA id XM_007258976.3
length 2305
RNA type mRNA
GC content 0.42
exon number 10
gene id lztfl1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51484768 ~ 51495272 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTTCCGTTTCCAAGAGCAACAGACGGCCAAACTCGACACAGCTAACCCAACAGCTCCCGGCTAACCGGCTAACATTCACCCAAACACTCagtaaacacagagacagatagCACTGACCGATCTAGTGCTGGGTTTAGAGCTCCGTGcctttctgtacttctgttcctttagattattttacattcttaGGCCTTTATATTCTGAGTTTCCCTGAGCAACACAGCCGCTGTTCATCCTGCTGTAATGGCTGATTTTGGGTTTAACGAGCACCACCAGAATGAGGTAATAAACTACATGCGCTTTGCTCGTTCAAAGAGGCTTCTGAGACTCAAGACTATTGACTCCTGTTTTCAGGACCTCAAAGACAGCAGGCTTGTAGAGGAGACGTTCACAGTGGACGAGGTGACTGACATGCTGGATGGTCTGCAGGTGGTGGTTCGTGGGGAAGTGGAGATGGAGCTGATTAACACGGCACACACCAACGTGCTGCTGCTGCGCCAGCTTTTCTCCCAGGCTGAGAAGTTCTACCTTCGGCTGCAGACTGATATCTCTGAGTTGGAGAACAGAGAATTACTAGAGCAAGTAGCAGAGTTTGAAAAAACTGACTTCAAATCCAACAGTAAGGGAAACCAGGAATCCAGTAAACCTAAGTTAGCCCCACTAAATGAGGGAGGAGTGTCTGAGCTACTGAACAAGGAGATTTCTAGACTTCAGGAGGAGAATGATAAGCTGAGGACGAGGCTACGCACTTTGGAAAGCCAGGCCATGAGTGCTCTGGATGAGCGGTCCAAGGCTGAGAGGGCCCTGAAGGACCTTCAGAAGATCCAGGGAGATCAACAGCGTGCATTGTGCGCTCAGGAGCTCTCCAATCTGGAGGACACAGTGGCAGCCATGCAGGCCGACTTTGAGAAATCACTGAACGCCAACGTAGCCTCACAGAAGGAGCTACAGGACAACCTGGTTTCAGCTAAACACGACCTGCTTCGGGTTCAGGAGCAGCTTTCTCTCGCTGAGAAGgagtTAGAAAAGAAGTTTCAGCAGACGGCTGCATATCGGAACATGAAGGAAATCCTAAGTAAGAAGAATGACCAGATTAAGGATCTCAGAAAAAGACTACAGAGATATGAGTCGGATGAGTGAAGTCTTCCCCCATAGAAAACTTCAACCAAGTGCAACGAGGGACTATAATGGACACAAAAGGAGCTAGAGTCAGTTTTGTAATTGATGCTATACCGCTATATTGGCAAGGGACCAAAGAATGAAACACAAGACGGACTAACGGGGACTTTTTTTGGAATTGCTGACACTCTTTAAGTTCCTCTTCAGCAAAATCTACCTTCTCATAAGGCTTTAAACCTATTAGCAGATATGATGTTTTTCACAGTGGTTAGGAATATTACTCagagtgctgtgaaaaaaaaatatttgcccaATTTTTGGTTTCGTGTTTTGCTTTGCATATTTGTCAACGTGACTGGTTTAAAATCTCCTGAAAGGAACCttggcaaaaacattttttgtttgtttatctaaCATGCATGTCACTTACCcatgagaaaaacaaaaatggccCTCAGACATGACAATGATTAATCAAAGAAATTTTTATCTGTAACAAGGTTTAGCTGATTGACGATGAGCCAACCATGCTGAACATAAAGCTAATTTGTAGAGGTTTTTCATTACTTTAGAGTGAAATGGCCACCATTTTTTTATAAGCAAGCATAGCCAAGCATAAAACACATAAAGATAaagctatttaaatatattagtcTGAAATGagttaaaacaacatttagtGCTTTACCAAAGCTTTTATCTCTAAACTGAGAGCCCTAGAAACAGTTGTGAATCCTTCAGAGTGGCCAGTCAGGCATTATGTTCCCAAGGGTTAATAAGCCAGCAATTCATGAAGAAAGTCACTGATGGTTCCAGGGGAACATCCAAGAACTGCAGATCTTTTCAGCCTCAGCTTAGCAGAAAACAAAATTAGACTCTTTATTTGTGTGGTATATACATGATCTGAACTTGTCCTGGTAAACATTTGTGAAATCCtgacaaaaacagcaaaaagtgcTGTTGCAGGGCCTTAACAAAGCAGTTCAGGTTTGAAAACTAACCATTATATTTGAATTTAAAGCAGTTTTGAGAAGAAAAGACTGCTCAAATTGCTTTACCACAATATGAAAGCCTGATAAAATTATAGTCAATGGATGGCTGCAGTTTTTGTCGCTAAAGTTTATGCCCCAAATGTGATTTGCTAGATTTATCActtcataaataaatgaaatatcaattttcaa

Function

GO: NA

KEGG:

id description
K19400 LZTFL1; leucine zipper transcription factor-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36958 lncRNA downstream 299526 51184728 ~ 51185242 (-) True G27523
TU36936 lncRNA downstream 440561 51039630 ~ 51044207 (-) True G27504
TU36934 lncRNA downstream 453467 51029156 ~ 51031301 (-) True G27502
TU36887 lncRNA downstream 512112 50954618 ~ 50972656 (-) True G27461
TU36879 lncRNA downstream 598872 50885531 ~ 50885896 (-) True G27454
TU37063 lncRNA upstream 265652 51760924 ~ 51761490 (-) False G27619
TU37065 lncRNA upstream 265652 51760924 ~ 51761490 (-) True G27619
TU37067 lncRNA upstream 290790 51786062 ~ 51789157 (-) True G27621
TU37070 lncRNA upstream 347662 51842934 ~ 51844943 (-) True G27623
TU37073 lncRNA upstream 404275 51899547 ~ 51900123 (-) True G27626
XM_022662381.1 mRNA downstream 2892 51465284 ~ 51481876 (-) True LOC103045300
XM_022662384.1 mRNA downstream 2892 51465316 ~ 51481876 (-) False LOC103045300
XM_007258975.3 mRNA downstream 24685 51455657 ~ 51460083 (-) True LOC103038926
XM_022662267.1 mRNA downstream 63376 51245789 ~ 51421392 (-) True gli3
XM_007255210.3 mRNA downstream 306417 51174484 ~ 51178351 (-) True pnrc1
XM_022662440.1 mRNA upstream 769776 52265048 ~ 52272380 (-) True LOC103029105
XM_022662320.1 mRNA upstream 798608 52293880 ~ 52321920 (-) False LOC103040973
XM_022662323.1 mRNA upstream 798608 52293880 ~ 52321920 (-) True LOC103040973
XM_022662441.1 mRNA upstream 879244 52374516 ~ 52382949 (-) True cgrrf1
XM_007252933.3 mRNA upstream 879244 52374516 ~ 52382530 (-) False cgrrf1
XR_001518286.2 other downstream 744334 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 945096 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 945096 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 945096 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 953129 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 1291200 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 1291200 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 2127004 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 2555489 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 3061674 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile