RNA id: XM_007259470.2


Basic Information

Item Value
RNA id XM_007259470.2
length 2602
RNA type mRNA
GC content 0.51
exon number 3
gene id myoc
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65931323 ~ 65941098 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTTTCAGACTGTATAAATAACTCCTGCCTGGGGTCCCCAGGCTCAGAGAAACAGCCTCCAGACCTGACAACACTGGGATCCCAAAGAACTATCAATCACCCCAAAACCCAGACTCTGCGCAGACCTGACACCGACCTGTGCACACTCAACTGGGAAAAGCAAGGACAGGGGgaagcagtgagagagataaaagagactAAGTAGAGGCTACGCTTCACTGGCACCAAGGCAGTGCTTCATCAGTCTGTCTCTCATTTCACTCAGGAGGGAAAGAGGAAGGAACAGATTAGTGACGGTGCTGCAGAGGGCAGAAGATCAGAAGGAAGACACAGTAAAGAAGTGAGGTGAGAAATCAGAAAAGGGAGCATCCGTgaggaaaggaaaagagaaaaacagcttCTCTGTGCCGCAGACTTCTATGATCTACTTGAAAATGTGGTCCCTGGCTGTAGTTTGGATCTCCAGCCTGCTTGTAAGTGCCCAGGCTCAGGGCACTGCCAGCCTCTGGAAAGGGAATGACCGCAGCGGCCGCTGCCAGTACAGCTTTACCGTGGACAGCCCAAAAGAAGCCAGCTGTCCCTCAGCAAGCACTGGACCTGAGATGGAAGCCCTGAAAGCACGTCTGGGACTGCTAGAGGTGCTGGTAGCCCGCCTGGCAGGAGGAGAGGCACCAGGAACTGTGGCTGGTGCAGGACTTCAGGAAGCCCACAGTCAGGCCATGAGGGACAAGGCTCAGCTACAGCGGGAGAAGACCCAGTTGCAGCGGGAGAAGGACCGGCTGGCCCAGCAAGTGGAGGACCTCCAAAAGAGAGTGGCAGAGCTTCAGAAGGAGGCAGAGAGGTTGAGGAGCAGACCCTGCCCACAGGCGCCTCCTCCCAGTGTGCCACAGCATGACAGTGGTCTCCGGCCTGGAGCTGACTCCTCTTGGCACTATGGAGGTCCAGCATACCAGGAGCTAAAGGCTGAAGTGGCTGAGGTTCCTGCCCCAAGCCCAGAGAACCCTGAGGATAATACAGGCTGTGGTGAGCTGCTGTCTGTGGGAGAGCCGGTGTCTCATCGTAAGGCAGACAGCATTGCCGGTAAGTACGGTGTGTGGATGCAGGACCCAGAGCCTGAGGCACCATACGGGCCAGGAATGCTGTGGCGCGTCGACACAGTAGGCTCAGAGGTGCGACAGCTCTTCGGCTATGAAGACATGCAGCAGCTGTCTCGTGGCTTCCCCACCAAGGTTCTGCTTCTGCCCGAGGCCATGGAGAGCACAGGGGCCGCCATGTACCGCGGCTCTCTCTACTACCAGCGCCGTCGCAGCCGCACCCTCATACGCTACGACCTGGCCTCGGAGAGCGTGGCTGCCCGCAGAGATCTGCCCCACGCCGGCTTCCACGGCCAGTTCCCCTACTCCTGGGGCGGCTACACGGACATCGACTTCGCCGTGGACGAGGAGGGGCTGTGGGTCATCTACAGCACCAACAAGGCCAAGGGCGCCATCGTGCTCTCCCAGTTGGACCCACACAGTCTCGAAGTTTTGAGGAGCTGGGAGACCAACATCCGCAAGACCACAGTGGCCAACGCCTTCATGATCTGCGGGAGGCTTTACACCGTGGCCAGCTACACCTCTCCCAACACCACAGTCAACTACAGCTTCGACACGAGCACCAGCCAGAGCAAAGCCATGACCGTGCCGTTCAAGAACCGCTACCGCTACAACAGCATGGTCGACTACAACCTGGTCCAAAGAAAGCTCTTCGCCTGGGATAACTACCACATTGTGTCGTACGACGTGCGGCTTGGCAAGCAACAGTAAAGCGCTACACAGTAGAGGTGGTTGCAGAACCATCATTATTATAAGAGGGGTTAACAGGTTGGAGACTGCACAAACATGTCTTGCTGGCATTGGGATTGTTCATAATACTACACTTCTACGCAATCATGGATGTAAAAATTCTATAGCTTTAATAAAGGTTTTTCTTAAATCAAACACACATAAATGCCAGCAAGGTCAAATAATTGTTTTCCTAATACATCATGAAGTTAAAAAGCCAAGTTGAATAAACTTCAGGGAAACCCCAGGCTCACCTCACTCTATTTGTAATGCAAATCAGGCTTTGAAAAGCAGACGCCCCAATCCAGATTTGGTGTCTTCTATTGCCAAGCCAAAAATGCACCCGCTGAAATATACAGATAACCAGTCATATAAAGCTGCTCTGGTCTTCCAAAACCTGTTACGTTGTTTGCTATTAAATGTTCAATAatgcagtttgtgtttgtgGTAAAAGCGCTCATCATGCAGTGCCACTCCCAAAAGCCATTTGGTTTAACTgggattttgtgtgtgtgttttttttttcttccaaagaGATTATTTTTCTACCTTTGCTTGTATGCCACATCTTGTGCATTCTGTGTACAGCACTGACACGAAGGCAAGAACAGCCAGTTTATTAACATTAAACTATAGTACACTTTTCCAGATAACTCACAGCTTTGAAAACATTTCTGATCTGCGAACACAGCATGGTACTGAGTTAATAGTATTCATTAAGTTATATTTCAAGTTTAAATTcataaacacagaataaagatttcttttttatatcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41729 lncRNA downstream 6626 65924231 ~ 65924697 (-) True G31073
TU41725 lncRNA downstream 7956 65918392 ~ 65923367 (-) True G31070
TU41704 lncRNA downstream 45156 65885468 ~ 65886167 (-) True G31053
TU41705 lncRNA downstream 45361 65885468 ~ 65885962 (-) False G31053
TU41706 lncRNA downstream 47710 65883267 ~ 65883613 (-) True G31054
TU41773 lncRNA upstream 63795 66004893 ~ 66005868 (-) True G31102
TU41780 lncRNA upstream 83117 66024215 ~ 66069347 (-) True G31108
TU41782 lncRNA upstream 84952 66026050 ~ 66038372 (-) True G31109
TU41797 lncRNA upstream 132235 66073333 ~ 66076356 (-) True G31118
TU41799 lncRNA upstream 138846 66079944 ~ 66080258 (-) True G31120
XM_007259474.2 mRNA downstream 84143 65838880 ~ 65847180 (-) True LOC103026271
XM_007259476.3 mRNA downstream 322549 65606592 ~ 65608774 (-) True jun
XM_007259477.2 mRNA downstream 329784 65598312 ~ 65601539 (-) True LOC103027150
XM_007259479.3 mRNA downstream 333864 65592679 ~ 65597459 (-) True LOC103027761
XM_007259478.3 mRNA downstream 344754 65582983 ~ 65586569 (-) True LOC103027441
XM_007259465.2 mRNA upstream 6536 65947634 ~ 65965285 (-) False vamp4
XM_015608435.2 mRNA upstream 6536 65947634 ~ 65965285 (-) False vamp4
XM_007259463.2 mRNA upstream 6536 65947634 ~ 65965285 (-) False vamp4
XM_007259464.3 mRNA upstream 6536 65947634 ~ 65965285 (-) False vamp4
XM_015608434.2 mRNA upstream 6536 65947634 ~ 65965285 (-) False vamp4
trnad-guc_8 other downstream 833650 65097602 ~ 65097673 (-) True trnad-guc_8
trnad-guc_7 other downstream 838174 65093078 ~ 65093149 (-) True trnad-guc_7
trnad-guc_3 other downstream 858510 65072742 ~ 65072813 (-) True trnad-guc_3
trnad-guc_2 other downstream 859108 65072144 ~ 65072215 (-) True trnad-guc_2
TU41381 other downstream 1144078 64783508 ~ 64787245 (-) False LOC103036530
TU42030 other upstream 921367 66862465 ~ 66891619 (-) False LOC103031958
TU42210 other upstream 1482774 67423872 ~ 67432424 (-) True G31424
TU42226 other upstream 1562651 67503749 ~ 67528337 (-) True G31437
trnai-aau other upstream 1716367 67657465 ~ 67657537 (-) True trnai-aau
trnai-aau_1 other upstream 1716528 67657626 ~ 67657698 (-) True trnai-aau_1

Expression Profile