RNA id: XM_007259479.3


Basic Information

Item Value
RNA id XM_007259479.3
length 939
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC103027761
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65592679 ~ 65597459 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAACGTCACCGAGCTGCACCACGTGACCCGTGTTTTTCTAACATGGCTAGGAATGAGGAGAAGCAGCTGGGGAAACTGAACCGGTTATGGCTCCAGAAGGAGAGAGCGGAGGGTCGCATCAAGGATCTTAATGAACGGAGACCAAAGCTTGCAACTCTGAACTCAGTTGCAGCCGTGAAGAAATGGATACCAAGCATCAAGCGTGAAATCGAGTACTACCTGCAGCAGTCTCAGTTATCCCACTACCCAGAGAGGAAGATAACAGAGTTCCAGCAGCAAATTGAGCATCTGGAAAAGGAGTACAAGCGTTATCTCAACAAACTGCGCTCTCTGGACCCCACCTGCAAACATAAGCCTTGGACTCCAAGAGCCTACACCAAGAGGAGGCAAGACACTGACAGCAGTCAGTGTTTGGCCAAAAGGCTCTGCGATCCTGATCTTGGTAAAGAAACGTGTTCTGAAGAAGGAGCTACAACATCTGCCCTATTTGATCCTGATCTGCCTAAACAATCAACTGCCAGCACCAGCCCAACTTCCGATTGTCCAGAACAGGACCTCCCACTCTCTTTTGACCGCACCAAGCTGGCAGTAGCAGTGTCTGGGTCTTGGAGGGCTCCCTTGGAACAGCTGCAGGACATTACCAAGCTGGCGTGTGTCTTACACAGAGGCCTACCCAACCTGCACAGCTCCATAGCACCAGCTGGAGAACTCCAGGAAAGTCAGGAGACAAAAGAAACAACCTGTAGCGAAATACCTCAGAATAAGACAGAACATGTGCTGGGACTGGGGTGCTACTCATCTTCTTCTGATGAGGATAACCATTGAgatctgtgtgattttttttctcacccAATTTGTACAAAGGGATGTTGTAAAGATGACTGTGAGGCTTTTCTGTTTTGAacattgtataataaatagattttaaaaaattaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41593 lncRNA downstream 625 65591823 ~ 65592054 (-) True G30980
TU41549 lncRNA downstream 118014 65473137 ~ 65474665 (-) True G30942
TU41520 lncRNA downstream 138419 65281419 ~ 65454260 (-) True G30919
TU41494 lncRNA downstream 433395 65154118 ~ 65159284 (-) True G30900
TU41454 lncRNA downstream 569727 65022352 ~ 65022952 (-) True G30869
TU41607 lncRNA upstream 80051 65677510 ~ 65681603 (-) True G30990
TU41663 lncRNA upstream 131020 65728479 ~ 65728703 (-) True G31021
TU41673 lncRNA upstream 236119 65833578 ~ 65835223 (-) True G31029
TU41700 lncRNA upstream 273605 65871064 ~ 65872082 (-) True G31049
TU41702 lncRNA upstream 277728 65875187 ~ 65875426 (-) True G31051
XM_007259478.3 mRNA downstream 6110 65582983 ~ 65586569 (-) True LOC103027441
XM_007259484.3 mRNA downstream 174198 65370370 ~ 65418481 (-) True LOC103029766
XM_007259482.3 mRNA downstream 346990 65225005 ~ 65245689 (-) True zyg11b
XM_015608420.2 mRNA downstream 531071 65048058 ~ 65061608 (-) True LOC103032200
XM_022664698.1 mRNA downstream 573444 64964432 ~ 65019235 (-) False ipo13
XM_007259477.2 mRNA upstream 853 65598312 ~ 65601539 (-) True LOC103027150
XM_007259476.3 mRNA upstream 9133 65606592 ~ 65608774 (-) True jun
XM_007259474.2 mRNA upstream 241421 65838880 ~ 65847180 (-) True LOC103026271
XM_007259470.2 mRNA upstream 333864 65931323 ~ 65941098 (-) False myoc
XM_007259469.2 mRNA upstream 333864 65931323 ~ 65941098 (-) True myoc
trnad-guc_8 other downstream 495006 65097602 ~ 65097673 (-) True trnad-guc_8
trnad-guc_7 other downstream 499530 65093078 ~ 65093149 (-) True trnad-guc_7
trnad-guc_3 other downstream 519866 65072742 ~ 65072813 (-) True trnad-guc_3
trnad-guc_2 other downstream 520464 65072144 ~ 65072215 (-) True trnad-guc_2
TU41381 other downstream 805434 64783508 ~ 64787245 (-) False LOC103036530
TU42030 other upstream 1265006 66862465 ~ 66891619 (-) False LOC103031958
TU42210 other upstream 1826413 67423872 ~ 67432424 (-) True G31424
TU42226 other upstream 1906290 67503749 ~ 67528337 (-) True G31437
trnai-aau other upstream 2060006 67657465 ~ 67657537 (-) True trnai-aau
trnai-aau_1 other upstream 2060167 67657626 ~ 67657698 (-) True trnai-aau_1

Expression Profile