RNA id: XM_022664795.1


Basic Information

Item Value
RNA id XM_022664795.1
length 8620
RNA type mRNA
GC content 0.43
exon number 20
gene id ralgps2
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65247335 ~ 65454308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCAGCCGGTGCTCCTCCATGCACAGGCGGCCAACCGTCACCTCTGATAAGGCTGCAGCAGAAGAGCACAGCACAGGCAGCCGCCGGAGCTCCGCCCAGCTCCATCCCGCCGGTCAAacccacactcactcactcacacacacactcagagcgACACGCTTGGAAACACTTGACTTCGCGGGTGTAGGAGTTATTTTGGAAGCGATTAAACCTGCAAAATCGGGCGGAACAGACTGCAGTTCACAGGAGGGCACGGAGCTCGGCGCACAGAGAGGTGAGGGTTTACATTGAGGCCTCAGAGCAGACGTCTTTCCACACACGCCATACCAAACCCAGGAGGAAAAGACAGACAGCCAGTCACAATGCTTGATCTGACATTGACTTGaGTGCCAGCCAGGCATACTCTTAacagatgaggatgatgatgatgatgatgaggaaaCTACTGCGCTAGTGCCAGATGGTTTGGGAATGATGGACGTCCCTAATGGCCAACCCAGCATCTCCACTTTAACCACTACTGCCTCGGAGagGAGCAGCAGCTCAGAGTCTCTGAGCGAGAAGGGCTCGTCTGAGCTGAAGAAGAGTTTTGATGCTGTCGTCTTTGATGTGCTGAAGGTCACGCCAGAGGAATATGCAGGTCAAATTACTCTCATGGATGCTCCAGTGTTCAAAGCCATCCAACCCGAGgAACTCTCGAGTTGTGGCTGGAACAAGAAAGAGAAGCACAGTTCAGCTCCTAATGCCGTGGCCTTCACACGCAGGTTCAaccaggtGAGTTTTTGGGTGGTGCGGGAGATTCTTCATGCACAAACTCTGAAGATCCGAGCTGAAGTTTTAAGTCACTACATCAGAACAGCCAAGAAACTGTGTGATATGAATAATCTCCATGCGGTGATGGCTGTAGTGTCTGGCCTACAGAGCGCTCCCATCTTCAGACTGACCAAGACGTGGGCACTGCTGAGTCGTAAGGATAAGGCTACGTTTGAGAGGCTGGAGTATCTGATGGCTAAAGAGGACAACTACAAGAGACTGCGAGactacatcagcagccagagcatGACCTCCTGCATACCTTACCTAGGTATGTACCTGTCTGATCTGACCTACATCGACTCAGCGTATCCCTCCACCGGCAGCATTCTGGAGAATGAGCAGCGCTCCAACCTGATGAACAACATCTTGAGAATCATCTCAGACCTCCAGAGATCCTGTGAATATGATATACCAGAATTGCCTCACGTCCAGAACTATCTTAACTCAGTTCACTACATCGAGGAGTTACAGAAGTTTGTGGAGGACGACAACTACAAGTTGTCTTTAAAGATTGAGCCAGCCACCAGCACCCCCCGTGCAACTGCCTCTAGAGAAGACCTTGTAGGTCCTGATGCCACCGGCTCGCCGTTATGCGGTCGCCGTGGCAACATGGCCGAAGGCGCCCTACCCAAAGTCCCACCCACACCACCTTCCCCACGCAACCTTCTCCCGTACGGACACAGGAAGTGTCACAGCCTGGGATACAATTTCATTCATAAGATGAACACGGTGGAGTTTAAGAGCGCTACATTCCCAAATGCTGGGTCCAGACACCTGCTGGATGACAGCGTGCTGGAGAGCCATACACCCACAAGGGGCCAAGCCGAGAGCTCCACCCTGTCCAGCGGCATCTCGCTGGGAAGCAGTGAAGGCTCTGAATTGAGTGAAGAAATGTCTTGGCCTGCTTTTGAGAGCTCTGCAGAGTCAGAGGAGTTAGCAGTGCACCTGTACCCCGGAGCAGTGACTGTTCAGGGAGTGTTACGCAGGAAGACCCTCCTCAAGGAGGGCAAGAAACCCACGgTGGCTGCATGGACTAAGTACTGGGTAGCTCTGTGTGGTACTCAGCTCTACTATTACACTGCCAAATCTCTCAAAGCCACAGAGAGGAAGCATTTTAAATCCACTTCCAGTAAGTGCGTGTCGGTTGTGGGCTTGATGGCCATGATGGCAGATGATCCAGAGCATCCTGACGTCTTCCTGCTGACTGACTCTGAGCACGgaaaCTCTTATAAGTTCCAGGCAGGGAACAGAATGAATGCTCTGCTGTGGTTCAAACATCTGAGTGCAGCATGTCAGAGTAACAGACAGCAGgTCCCAGCTAATCTAATGTCGTTTGAATGAAAGGACAGATgagccggagagagagagagagagagagagagctgttaaAAGGTGGTTTCTGAAGTACGGGAGGAGTGGAGGGGAGTGGAGGGaaagggaagagaagagaagacgaGTGGAGAGTGAACACTTTTAACGGTAGCTTTCCCACTGCCATCACCCAGCCTGAGTCACGCAGGGAAGCCCTCCAACCACCACTGCCTTAAAgagtggtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtatgactgctCCACTGGACTGGAGGATTTGAACACTCTCTTCTTTACCCTctccttttctctgttttttttttttcttttttttcttatttacttattctttcctctgtttttttttcttcttaactTTCCACCCTTTCTTAATTCCCCttgctttccttttttcctttatctattttttccaatttttattattccttttcctttttttttctctctccctccttggCTTTCGTGTTCTCTTTAAATTTTCTTGTCCCTGCCTTCTTCACACTCTCTCCATACTAAAGTCCCAAGCGAGGAACTCTGCACTCCTTCCACCAGGActtcactcctcctcctcctcctcttcctccatctTCTCAAGCCCGTTCCTGAAGTCAGCGTTCAGCATTCAGACGCCTGGATCTTAACCCCTCCGCTCACTTCTTCGCTTGTTCTGATTTTGATGAACACATTATTTGTACATTAAATGAGTCCCCGTTTCCTCTCTGTCCTTCTTGGATTACTGAACTCTGGGGAAGGAAGAGGGGGGTCCTTTCTGAGAGTCAAGCCCAAGCAGGGGTCACCCTAcagggggtaaaaaaaaaaaaatctgaactgtTCCTCCTGCTCCTTCTCCACAATGAAGCTGGACACTTCTTCAGGACCTTCTACAAAGGagaccattttttaaaaagggggGTGTTTGTCACGTGTGGACAAAACTCTCGCACACTCatttaacacatacacacacacatacacgcacacacacactcactctctcgcacaaGTAGTTGATTGACTTTTCACACACTTGAGTTGGGCTCAAGCAAGCATGACACAAGCACATTTTCCACATGCAGGTTTTAACTGCAGCGAGTGGGAAGTGTCTCGCTTGTTCAAAACAACTGCAACACTCGCAACCAAACGACAAAGGGCTCTGATACTCGATGAACACCAGACGAAAAGTATTCCCCAACTCTTCTTGAATGTCTGATTCACGTTTTTtgggtgttattttttttttatatcctatGAATTTGTGTAAAATACCTACACCTACACAAGTACACACGTGCACACGAACACACAAGTAGTGTTTGAGATAAGGGAGCTTTCTTACACTGAGACCAGAGGCGCGTAGCCATCTGTTGGAAAGAAGTACAAGGTTTAGAGCTGGGAGAGAACGTATGTGAGAGAATGACTGAACGGAACGGTGGtggtgaagatgatgatgatgatgatgatgatgatgcaagAACTGAGTTTGGGTGTGCAAGTGCGGCGCAGTGTGTATGAACCGatgaggttttttttgttgttgttttttttttatatatatatagcaggtGCTCTTCATGGTACAACTGAGGCAAAACAGGCCTCTAAACAGGGTCCTATGTATAGTTTAagtctctctcgttttctcattctttctctctcataaaTTATAGGCTGACCTCAGACGCGGTCAGACGTCCACTGGGAACACAAACCTTTTCATCGTCACTTGAAAGCTGTGAATGTTTATTGGTTTCTTGCCTGTAAAGTCAAGCGGTTTATCTGCAGTGTCTCGCACCAGTAGATCAGTCTTCATATCAGACAGGATTAACAGGCTGTCACTTGAAGGGTACGTGTGAGCATAGTGTGTCCATCAGTCCTTTAGCGGAATTCTCAAGTCCAAAACTGAAAGCTACCCAGGagccatttctgttttttttttctttctctattttatttagtttactgAGTTGTGtcggtttattttatttgcagtatTACTCGGGTAGATCACGTTGCACACAGGTCTAGGTTGttttaattgtctgttacattgaatttagttttttctgttttagttttttttgacatgttttaatgtgtttttgtgttggaTTTTATTTTGCTAGTTTTTTGCCTTTTGTATGTGTAACCAAGTGGGAGTTTACTAATACAGCACAGCGGCTACACTGCCTGTGTTTAGTGCTTAGCATCAAAGGAAAGGAAGGCTAGACAGCGATGAGAAAGTTCTTGATGGTTTTTAAATGGTCACACTGGTGTGTGTCTCAGACTACTATGTGTAATACCTGTAGAAACCAGttgataagaagcttttttttgtccTCATGCAGTCTGACAAGCGCCTCCATGTTCTGCTGCATATCTGGTTCTGTTCAGAGCAAGAGAGGAGATGAGAGCGAGGGATTCGCTCAGAACAAATGATGAGCAGAACTGTTCATGcttatgctttaaaaatgaagACATCATGGAGGAATGCCAAGAAATAACCACAGTGGTTCCCTAAAGAGCTCCTCCCAGTGAATAACCATATACCAACCATTACTCCCTTTAGGAAGAAATcagttacattttttacagattttttttacgtttaaggaaactaaaatatactttaCTTGAACTTTCTAAAAGGCacttaaaataacataacatataacaataaagaaaatattgatttcttagtaAATATTCTGATTCCCAAAAAGGAACAATTGGTTGATCTATGGTTACTAATGTAGAGGCTCAATTGATTGcaacagttttaatgcatcaaaGGTAATGACTTTATGGCATAACTCTAAATAACCATTTTTGGCACTTGTCATTTTAGGAGTTTAGTAGAAAATAGGCAGAAAATATAAtcttccatctttttttttctttttttttatatatatatataattttccaCACCAGTAGATGATTTCATTTCTTCAGGATGTGCTCTTTTCTCCAGTCACTTGTTTTTCTCCCTCTTGCAATGTTCTCTAAATGTGGCAgacccccttttttttttttagatacagtGATCAAAATGATCctgtattattatgtttttctcCTTATGCTCCTCAGTCAGCTCTCACAAAGTGAACAAGGGCACTGAAGATGCTCACTTGTACTGAAGAGTATTAGAAGCTCATCTTTGCTCTGCTTTGCTTCATtaagagttttatatttttctttttaaaatggttaaaagcTTTGAGGGAACTTGTGGGAATAAATGTTCAGGAGCAGAAATgtgaaataatagtaataatagtgtgcTAAACGTGTTTCAGTGCTCTAAAGGCCAGAATACACTGAGCACACCAGTGTTTCTCAGTCCTGATCCTGGAGGCACCATATCTTGCACATTTAGTGCTtccccaacacacctgattccactAATCAACTAATTAACAAGTGTTTCCTGAGTGTCAGGGATGTGTGTTAAAGTTTGGAATACACTAAAATGTACAGGATGGTTGCCTTTCAGTACCAGGATTAAGAAACACTGGACCAGACTAATATGATTAAACATAAttctatatttttgttttccaaATCATTGGTTCTTAAGCTGGTCTTGCTCTACGGTAGCAAAACTGTGGACTGTCTAAGAATCTCGGACTGGGTCCAACAGATTCATTGCCCTAAGAAACCTTCAAATGGATGGGCAGAACTTTATAGAAGCTTTAGTGTAAATGCTTAATGAGCctctaaatcatttaaatattctagaaaataaaaaaaaacttttggaacctttaaaaacaatgtatttacaCTTACAGATCTCCTTTTGAGACAGTGATGTTAAGGGAACTGAAATTGGTTCTTTTTGTCCCTTTTTTATAGTGTAGGAGTGTCTTAAGTCAGGATGTCTTTTTgatggtgatttttttatttttacataggTTCCACATAAGGATTAAGGTCAATAGCATAAAGACCTGCAGCCACACCGGCCCTTTACAAATAATACCTCATGGTCTTTATGGTTTAAGGGCTTACTGCTTTTCTGCATTTATAAGCTGCTgtttaagctttttatttaaagaatgtgTTAATTCTTCCATTGGGTTCAGAGAAGTCTCAGAACGCATTAATGCAAAAGgggaaataaacaataattgaattgaattgaactgtTAAAGAGCCACGTTGGCTTCAGTGGAGAGTTTTGCCAGTGGCTGTTTTTGGCTTAAGCTTCGTGTCCAGGTGAAGCAGAGCAGCTATAGTGGTTCACACAGGGAACGTGTGGGAGGTTGGGACAGGCGAGTTAACTTCAGTGTGTGGCTGAACAGCTTGCAGTGTGTCGCCGTGcttcagcacacagagactcactcacacaaacacacacacagagagccaCAGGCAAGTGAACAGGGTGACAGGTGAGAGTTTTACTGCTTTTCACACACTGACAGACTGCCCggaagaggagagaaaaaagagatagtgtgtggagagaaagaggaaacagaaaaaagagcaaTAACTGTTGTCAGCCACGTCATCCAATCCAATAGCAGTTGAGAGAACTATGAAGAACTCTGACCTTGTCCACTTCATGCACGTCATGGTCAAGTGGTCACAGACTATTTGTCACTCATCCCCTCTACCCATCCTTTGCTTTGATGTCTTATAAAAAGCCTTTTCATCTGCTTGCTTTTAGCTGCTAACATATAAAAACCAAAGGGCAGAAATGAAAACAACTGAAAATACACTGTCAAGTGTGGAGAAAACAGTGACTGGAGGAACAAAAGCTACCACTGTAACtcatcttatttttcttttctttgtttttttcctctgcaCTATCCGAGTGTCTGCCAAGTACAGTTGGACATGGAGAGCTATTCAGACAAGTTATGCAATATTTGAAAGCAGAAATTGGTCCAAGCGCATTTGGTTAATCGATGTCATTGTACACCCAGCCACTGTGTAAATCTGTGAGTTTACGTTCTGCTATTGAATGggaacatttctgtttttatttgtggtttatgttgtattttttcctttccttcatgttgttttttcttcccATCTCGCTAAACTTGTTACATTTGTCGAGAATACCCTGTGTGTCACACatgcattatattataatttgaaCTAACACACTGTGTTATGTGTACAGTATACAATACacaaatgcacagaaaagagaCATTTGTCTCTCcggtgtgtttctatttttatggaagcccatttctgcCACTTGGGAGGGAAAAAAGactatataattttatttctcatttttatgcCACTTTCtccccaacccactcattaggactcccccatcactggtgatgcctccttcgatacatgtgcagtcagccactgcctctgaTTCTGTTCCCAATACAGCAGCTcgcagacgccttgtgctgatcaccatcaccctttagagtgatgaggggaaagagcaccatctacccacccagagagagcaaggccaattgtgctctctcagggctccggtagctgatggcaagctacataaacaggatttaaactagcgatctcctgatcatagtggcagcaccttatttgcaggaccactcggagccccaaTAAGGAGTAAATTTAAATGGCTGTAAGTTATCATTGAGATACAAttcagatactaagtcataattttgagatagtatAAGATACTGAGTCACAATTAGTCATTGAGTTACTAGGTCATGAGATACAGCCATAATTAATTGGAATAGTAAGTGAACGAGTGTTTGCTGAGTCAATGAAGACAGCAAGATCTTGTAATGAGTTTCTCATATAAGACACAAAGTCATTATTACTAGATGCTTATTTATTCTTTCGTTTTACGACTTTATTACTTACAAGACTCACTAAATGGCAGTGGCAGAGATGGGCTTCCATATTCCTGTAGCTTTTCCTTTTGCTCTATTGGCTTTTAGTGGGATGGGACAGACACAGAGTGTTGATGAAAAGATTtgtcttgtgtgtgtatgaatgttaATCATTCAGTCACGATATCAGTGATGTCATTCTGTACCGTCCCACTTCCCCTCCCTCCTCCTGTAGCCTGCATTGCTGAACCCAAAGCTTGAGCACTATGACCTCTAAAGACAGAGTGACGTGCTTGCAGCTTCTTTAAaggttcagaaaaaaaaaagcatcaaataaacacttgaGTTCCTTTTTTCTAAACCGTTCTAAtgctttgggttttttttttgtttgttttttgccgAAAGCCGCTCATCATACATCAAGTCCTCTGTGTGTTTGAATGCGGGTGAACTGGCTTTCTTATACACTGCAGTTTGTGTATGCCTGGGTCTGAGCGCTTGCACATAAGCTGGTGTTGTAACACTCATGGTTTCtaatcaaacaataaaaaaatgacagaatTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41236 lncRNA upstream 91591 65050824 ~ 65159264 (+) True G30718
TU41249 lncRNA upstream 164722 65083989 ~ 65086133 (+) False LOC103031672
TU41246 lncRNA upstream 169904 65076472 ~ 65080951 (+) True G30726
TU41242 lncRNA upstream 191405 65057519 ~ 65059450 (+) True G30722
TU41241 lncRNA upstream 192867 65057519 ~ 65057988 (+) False G30722
TU41313 lncRNA downstream 13165 65467473 ~ 65468744 (+) True G30775
TU41319 lncRNA downstream 41213 65495521 ~ 65496339 (+) True G30779
TU41320 lncRNA downstream 42786 65497094 ~ 65500395 (+) True G30780
TU41567 lncRNA downstream 109346 65563654 ~ 65563914 (+) True G30959
TU41577 lncRNA downstream 142079 65596387 ~ 65597484 (+) True G30968
XM_007259483.3 mRNA upstream 1545 65246531 ~ 65249310 (+) True LOC103029237
XM_007259489.3 mRNA upstream 26355 65212693 ~ 65224500 (+) True echdc2
XM_007259490.3 mRNA upstream 39350 65183357 ~ 65211505 (+) True LOC103031359
XM_007259524.2 mRNA upstream 104228 65107510 ~ 65146627 (+) True LOC103041220
XM_022678446.1 mRNA upstream 164075 65077780 ~ 65086780 (+) True LOC103031672
XM_007259480.3 mRNA downstream 2429 65456737 ~ 65490821 (+) False fam20b
XM_022664809.1 mRNA downstream 4150 65458458 ~ 65490821 (+) True fam20b
XM_007259475.2 mRNA downstream 400626 65854934 ~ 65862128 (+) True plpp6
XM_022664860.1 mRNA downstream 415040 65869348 ~ 65886738 (+) True LOC103025553
XM_022664867.1 mRNA downstream 436622 65890930 ~ 65902416 (+) True LOC103024186
trnad-guc_10 other upstream 151493 65099291 ~ 65099362 (+) True trnad-guc_10
trnad-guc_9 other upstream 152282 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_6 other upstream 175668 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_5 other upstream 176213 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_4 other upstream 177183 65073601 ~ 65073672 (+) True trnad-guc_4
TU41629 other downstream 374473 65828781 ~ 65837365 (+) True G31000
XR_002649741.1 other downstream 394819 65849127 ~ 65849762 (+) True LOC111191945
TU42094 other downstream 1759997 67214305 ~ 67215186 (+) True G31355
TU42187 other downstream 2042895 67497203 ~ 67497697 (+) True G31407
TU42315 other downstream 2377512 67831820 ~ 67833215 (+) False hmcn1

Expression Profile