RNA id: XM_007259519.3


Basic Information

Item Value
RNA id XM_007259519.3
length 3354
RNA type mRNA
GC content 0.48
exon number 19
gene id exoc1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64572370 ~ 64589618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTCAGAGCTCCAGCTGAAGGAGCTCCGCAGCGGAAACAGGGCTGTTGTTGTGATGGTGGAGCAGGTTGGGCTGTGGCCGTGAAATAGACAGTAATGTTAGCGCTGTTTTTATAGGTTAATGTGGACGGGGTTTGTTGTGTGAAGGATAAACCGCTGTTGTTCGCTGTGCTGGAGGCTGTGCGGCCCTGTATTGAGGAGGCAAAATGACTGCCATAAAGCATGCTCTCCAGAGGGACATCTTTACTCCCAACGATGAGCGCCTGCTTAGCATCGTCAACGTCTGTAAGGccgggaagaagaagaagaattgtTTCCTGTGTGCCACAGtGACAACGGAGCGCCCAGTGCAGGTCAGGGTGGTAAAAGTAAAGAAGTCAGACAAAGGAGACTTTTACAAGAGACAGATGGCCTGGGAGCTTCGTGACCTGGCTGAGGTTGATGCCAAAGATGCTAACAAGGAGAATCCAGAGTTTGACCTACACTTTGAGAAAGTGTATCGCTGGGTGgccagcagcacagcagagaaGAACTCCTTTATTTCCTGCATCTGGAAGCTGAATCAGCGCTACCTGAGAAAGAAGGTGGAGTTTGTAAATGTCAGCTCCCAGCTGCTGGAAGAGTCGGTTCCCAGTGGCGAGAGCCAGAGTGTTGCCGGGGGTGATGAGGATGCTCTGGATGACTACCAGGAGCTGAATGCACGGGAGGAGCAGGACATTGAGAACATGATGgaagtgtgtgaatgtgccatCTCCAACGCCGAAGCCTTCGCTGAGAAACTCTCTCGGGAGCTGCAGGTCCTGGATGGGGCAAACATCCAGTCAATAATGGCGTCAGAAAAGCAGGTGAACATTCTGATGCAGCTGCTGGATGAGGCTCTCACTGAGGTTGACACCATTGAGGGCAAGCTGCTGAGTTATGAGGAGATGCTGCAAAGCGTCAAGGAGCAGATGGACCAAATCTCACAGAGCAACCGCCTCATTCAGATCAGCAACACTAATAATGGAAAACTGTTGGATGAGATCCAGTTCCTAGTGAACTACATGGACTTGTCTAAAGGACACATCAGAGCTCTACAGGAGGGAGACCTGTCCTCTCCAAAAGGCATCGAGGCTTGCATCAATGCCTCAGAGGCTCTCCTGCAGTGCATGAACGTGGCACTCCGTCCAGgtCACGATAAGCTGATGGCTGTGAAGGAGCAGCAGCATCTGTTCACGGAACTGAGAGACGTGTTCGCCCGACGCCTCACCAACCACCTCAATAATGTATTTGTACACCagGGTCATGACCAGAGCTCCACATTGTCTCAGCACACGGCAGAACTGACTCTACCGAAGCACAGCCCACTGCACAGAGATCTGCTCAGATACGCCAAGCTGATGGAGTGGCTAaagaacacacagagagaaaagtATGAGGGCCTATCCAGGACCTATGTTGACTACATGACTAGATTATACGAGAGGGAAATCAAGGATTTCTTTGAAGTTGCCAAAATCAAAATGGCTGGAACTACAAAGGAAGGGAAGGGAAAGTTTGCCACGCTTCCTCGGAAAGAGAGCGCTCTCAAACAGGAGACAGAAAGCCTACACGGGAGCTCGGGGAAACTGACTGGTTCCACATCTAGTCTCAACAAGCTGGCGGTCAGCAGCTCCAACAGCCGCCGCTCACAGTCCTCCTCCCTGCTGGACATGGGCAACATGTCCGCCTCCGACCTGGACGTGGCAGACCGGACCAAATTTGACAAGatcttCGAGCAAGTCCTCAGTGAGTTGGAGCCTCTGTGTCTTGCTGAGCAGGACTTCATCAGCAAGTTCTttaagctgcagcagcagccaaCACTGGCACAGGGGGAGAATACAGATTATCATGACGGTGTGCCCCATTCCAGACCAGTGAGCGAGCACAGACACTCCATATCTTCAGAgAAGGACATTGTTCGGCAGATGATGAATAAGATCTTCCAGAGTATCGAGACGGAACTGAACAGTCTTATTGCTCTGGGCGATAAGATCGACAGCTTTAACTCGCTCTACATGCTGGTTAAAATGAGTCATCATGTGTGGACAGCTGAGAACGTGGACCCTGCCTCCTATCTCAGCACCACCTTGGGCAACGTGCTGGTCACTGTCAAGAGAAACTTCGACAAATGCATTTCTGGGCAGATCAAGCAGATGGAAGAGGTGAAGATTTCTAAGAAGAGTAAGGTGGGGATCCTGCCCTTCGTCACAGGGTTTGAAGAATTTGCCGAACTGGCCGAGACTATTTTCCGCAATGCAGAACGACGGGGGGATTTGGATAAAGCATATGTAAAGCTCATTAGAGCTGTCTTCATGAATGTGGAGAAAGTGGCCAATGAGAGTCAGAAGACTCCACGTGATGTGGTGATGATGGAGAATTTCCACCATATCTTCTCCACGCTGTCACGTCTTAAGATCTCATGCTTGGAGGCGGAGAGAAAGGAGGCCAAGCACAAATACACAGACCATCTGCAGTCTTACGTTATCAACTCTCTTGGACAGCCACTGGAGAAACTGAACCACTTCTTTGAGGGGGTGGAAGCGCGAGTGGCTCAGGGTGTTCGGGAAGAGGAGGTGAGCTACCAGCTGGCGTTTAACAAACAGGAGCTGAGGAAAGTGATTAAGGAATACCCTGGAAAAGAGGTGAAGAAAGGCCTGGACAACCTCTACAAGAAGGTGGACAAGCACCTGTGTGAGGAAGAGAGTCTTCTACAGGTGGTGTGGCACTCCATGCAGGATGAGTTCATCCGGCAGTATAAGCACTTTGAGGGGTTGATAAACCGCTGCTATCCTGGCTCAGGCATCACCATGGAGTTCACCATACAGGACATGCTGGAGTACTTCTCCAGTATCGCTCAGTCCCACTAGAAATACAACAAGAGAGAATGTGTGACTGGTTCACAGACAGTAAGAATGATGtttatgtgtgtaagtgtgagcgAAAGAAAAAGGGAGTGAGTTTATCATTATAAAATGATATGCagttgtgtgtatgtttatgtaTATTAAATTGATTTACATGTATGAGATCAACTCCTTTGGcttttaacagcagcagcactgcaACATCTAATtccaatttatttaataatagagATTATGTTAAAGTCTCCATGCTACTCTATACTGATCTGTTTGGTGATGCAACAGAACATTGACACTAAGTACACTGGTAAAGaatttcactttaaaatgactgaacctgttgatttttttaaaattcaaattcaCTATCCTTCTCAGTCTGATGTTCAACTCAATCTTTGCACTTGTAATGAATAACCAATgccaaatgtaaaataaaaaccctACTTATCTCCATACATTGACCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41042 lncRNA upstream 26250 64544303 ~ 64546122 (+) True G30589
TU41041 lncRNA upstream 28951 64542115 ~ 64543421 (+) True G30588
TU41040 lncRNA upstream 42209 64529930 ~ 64530163 (+) True G30587
TU40985 lncRNA upstream 115940 64454774 ~ 64456432 (+) True G30543
TU40982 lncRNA upstream 146970 64423509 ~ 64425402 (+) True G30540
TU41081 lncRNA downstream 23342 64612960 ~ 64614108 (+) True G30615
TU41083 lncRNA downstream 25809 64615427 ~ 64622338 (+) True G30617
TU41109 lncRNA downstream 119705 64709323 ~ 64719038 (+) True G30640
TU41139 lncRNA downstream 131337 64720955 ~ 64832837 (+) True G30646
TU41133 lncRNA downstream 140446 64730064 ~ 64822659 (+) False G30644
XM_022664462.1 mRNA upstream 153929 64412269 ~ 64418443 (+) True LOC103022915
XM_022664465.1 mRNA upstream 153929 64412269 ~ 64418443 (+) False LOC103022915
XM_022664467.1 mRNA upstream 153929 64412272 ~ 64418443 (+) False LOC103022915
XM_007257047.3 mRNA upstream 160671 64399672 ~ 64411701 (+) True tmem165
XM_007257048.3 mRNA upstream 174743 64394209 ~ 64397629 (+) True srd5a3
XM_007259517.3 mRNA downstream 2039 64591657 ~ 64602638 (+) True chst14
XM_022664548.1 mRNA downstream 39555 64629173 ~ 64673511 (+) True kiaa1211
XM_022664542.1 mRNA downstream 59658 64649276 ~ 64673511 (+) False kiaa1211
XM_022664540.1 mRNA downstream 67867 64657485 ~ 64673511 (+) False kiaa1211
XM_007259514.3 mRNA downstream 72757 64662375 ~ 64673511 (+) False kiaa1211
TU40713 other upstream 1226679 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 483983 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 484953 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 485498 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 508884 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 509673 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile