RNA id: XM_007259844.3


Basic Information

Item Value
RNA id XM_007259844.3
length 1874
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC103035909
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39750022 ~ 39751990 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGGTCCTTAACGGAGCTCAAACTAATGATATATGTTACTAAAAAATTCCACAATGTGTATTGTAAAACAATACCAATGTTATGTTGCATTTTAATAATGAAGTGCATTGTCATAAAAAATTCTATTAATTTCAGATTGATCACAAGAATGACACAACATGGGTTACAAAACGACCTTCAACCAAACTGTGATGATGGGAAACCCTCCACTCTGTTATGAATTTCTGAACAGTTCATGTCATGTCAGCATTGTTTATCCGAAAGAAGCTCAATATtcactttacattttatttggatttgTATCCCTTTTTACATTTCTGGGGAATTTGTTGGTGATCGTAACTATCATTCACTTCAAGCAGCTGCACACACCAACTAactacctcattctctctctggcCGTTGCTGACCTGTGCATAGGAGCGATTGTGATGCCTCCCAGCATGCTACGCTCTGTGGAGACTTGCTGGTATTTGGGAAGCATATTCTGTAAAATACACACCAGTCTTGATGTTACAATGTCTACTGCTTCAATTCTAAATCTGTGTATAATTTCTGTAGATCGATATTATGCTGTGTGTCACCCCCTTCTCTATCACAGTAAAATGACTCCTAATGCCACTCTACTAATGATATTTGTATGCTGGACCATTTCTGGTTTTGTGGGATTTGGAATGATCTTTCTTGAGCTTGGTATTTTGGGAGTTGAAGATTTTTACTACAGTAATGTTGCCTGTGAGGGCGGCTGTTTTCTGTTTCTAAGTAAAACAGCAAGTGCTGTATTCACAATGCTCTGCTTCTACATTCCAGCTGTGGTCATGATCagtttatatatgaaaatatttcaCATTGCTAAAAGACAAGCTCGACTAATACAAAATGCGCAAATCTTGTCTTCCCATCGACATACTTCAGTGGGTAAGACTGAGATAAAAGCTACTAAAACTTTAGCCATTGTCATaggtgtttttctgttgttttggaCACCCTTTTTTGTCTGTGCCTTAATTGATCCCTTTATTGGATACACAGTCCCAATAGTTTTGTTTGACTTCTTTACGTGGGTGGGATATGTCAATTCCACTTGTAATCCTATTGTGTACGCCTTATTTTATAGCTGGTTTAGAAAATCCTTCAGAATTATATTGGTGGGCAAAATATTTCAGCCCAATTCATCTAGAACTAAGTTATTTTGATTCTaagatacaaatacaaatatcatGAGCATTTAAATAGTCAACTAAACATTTTACTGCATATATTGAAGTCATTTACTACTGTCTCATAAAAAAGTCTATAGTCCTGTTATCATGGTGTTCACTGAAATGACAGTGTTCAACAAGTGGCTCAAGACTTTTATTACGTCTATATCATCTAAAAGTCTTGTGGTCATGGATGTCGGGCTTTTTTTTAGGCTATCATGGACATTAAGGACTAGTGTTTTCTCTAACTGTGTGGAAGCCTCTTTTTTTTACCTATAACATTGTGTGCATTTCTTGTATACCCAGCATAGCtattttcttatcttatttttatgtGTTGACTCTCTCTACCTATACTAATTTTGGGATGATTTCAAATAAATATGTCTTCCTTATTtaccagttttttttattttgacctGCTATGTGAATGTAGCACATTACATGCCATGCTATTTCAATTATACTGTACCTGATCTGCAGCACCAGCTGCTGACAAACTCTCTGAGCAGTTGTTTAGGGCCACAGCCACTAGAGGTGGCCACATGATCAGAGTGTGCTTTGCTTTTTGACCCtctctttatttaaacatatactatactataatgtaCTGACATACACATTTAAACCTACATATTAGTACAGaggtataaaataaacaatagaatTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33580 lncRNA downstream 17543 39724455 ~ 39732479 (-) True G24964
XR_002652030.1 lncRNA downstream 225748 39514469 ~ 39524274 (-) True LOC111196215
TU33518 lncRNA downstream 250556 39499043 ~ 39499466 (-) True G24911
XR_002652028.1 lncRNA downstream 269678 39472824 ~ 39480344 (-) True LOC111196213
XR_002649667.1 lncRNA downstream 540757 39207714 ~ 39209265 (-) False LOC111191798
TU33623 lncRNA upstream 67286 39819276 ~ 39825981 (-) True G24992
TU33636 lncRNA upstream 93383 39845373 ~ 39848209 (-) True G24997
TU33637 lncRNA upstream 93383 39845373 ~ 39848209 (-) False G24997
TU33712 lncRNA upstream 423562 40175552 ~ 40230788 (-) False LOC111196341
TU33713 lncRNA upstream 423562 40175552 ~ 40230788 (-) False LOC111196341
XM_022667892.1 mRNA downstream 15054 39733847 ~ 39734968 (-) True LOC111191823
XM_022667889.1 mRNA downstream 21437 39727514 ~ 39728585 (-) True LOC111191820
XM_022678251.1 mRNA downstream 29300 39718689 ~ 39720722 (-) True LOC111194344
XM_015608494.2 mRNA downstream 44178 39704128 ~ 39705844 (-) True LOC103035599
XM_022667875.1 mRNA downstream 49316 39699292 ~ 39700706 (-) True LOC103035296
XM_022685486.1 mRNA upstream 3487 39755477 ~ 39756680 (-) True LOC103031565
XM_007259914.2 mRNA upstream 13465 39765455 ~ 39766663 (-) True LOC103031261
XM_007259845.3 mRNA upstream 22612 39774602 ~ 39777033 (-) True LOC103036329
XM_022685492.1 mRNA upstream 41726 39793716 ~ 39795025 (-) True LOC111196293
XM_007259841.3 mRNA upstream 44408 39796398 ~ 39798840 (-) True LOC103034967
TU33508 other downstream 291833 39455236 ~ 39458189 (-) True G24903
TU33468 other downstream 403153 39273635 ~ 39346869 (-) False LOC103043888
TU33946 other upstream 1462431 41214421 ~ 41218829 (-) True G25265
XR_002652122.1 other upstream 1685766 41437756 ~ 41442494 (-) False arhgap11a
XR_002652156.1 other upstream 2105048 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 2105049 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other upstream 2105059 41857049 ~ 41865844 (-) False LOC111196508

Expression Profile