RNA id: XM_007259845.3


Basic Information

Item Value
RNA id XM_007259845.3
length 2248
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC103036329
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39774602 ~ 39777033 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATGATCTAATAAAAAgcttattttagattttatgaaTGTTGTAACAAAACAACATGTAAGACATTAGGTTTTTAATTACACGGAGGAAACACTGGTTCAACTGGACTTCAGAATGAACTCAAGTCAAGATCAGATAATGGATATCACTCCTCTTTGCTATGAGTTTTCAAACACATCTTGTCCAAAGCATATTTATCCTGTACTTTTGAAGGTGGCCCTTTACTTGTTCTTCAGCTTAGTGGTGATTTTAACAGTATTGGGAAACTTGTTTGTCATCATAACAATTTTTCATTTCAAGCAGCTGCACATGCCAACTAACTTCCTGGTTCTGTCTCTGGCTGTAACTGATCTGCTGCTGGGTGGATTTGTGATGCCTCCCTGCATGCTACGTACTGTGGAAACTTGCTGGTATTTGGGCCCTTTATTCTGTAAAATACACGCCAGTGGGGGGGTTGTGATCATGTTGGCCACTGCTTCTATTATTAATTTGTCTTTCATATCAATTGACAGATATTACGCTGTGTGTAAACCTCTGATGTATCACAGTACAATCACCCCTTTTGTCacattaataatgattttaatcTGCTGGAGTGTCTCAATTTCAGTTGGCTTTGTAATAATATTTCTGGAGATCAACCTTCTGGGGGTTGAAGACTTTTACTATGAAAATATTGAATGCGAAGGAGGCTGTGTGTTATTTCAAAGCAAAACCTCAAGCACTTCTTCCTCTTTGCTTTCCTTTTATTTCCCAGGCATTGTGATGCTCAGTATATATTTGAAGATTTTCCGTGTTGCTCAAAAGCAAGCAAAATCTATTCAGGACTCAAAATCTAAAAAcagtgtgcaaaaaataagtaaagaagagagaaaagccACTAAAACTTTGGCCGTAATTTTGGGGGTATTTCTGTCACTTTGGACACCGTTTTTTATCTGCAATGTTATTAACCCTTTTATTGCATACTCAGTTCCTCCAGTACTGTATGACGCATTTGCATGGATTGGACTTATGAATTCAACCTGCAACCCTATTGTTTATGCTTTCTTCTACAAGTGGTTTAGAAAAGCATTTAGGATCATTTCATCTGGTAAAATATTTCAGCCAGGGTCTTCAAGAACTGATCTGTTTTCAAACTGAAACTGCATAAATGTAAGGAAATTAAAGGGAATTAAATTTTCAGAATTCAGAATTATTTTGTCAGGCCAGGTTTTCCAGCCAGGGTCTTCAAGAATTCATCTGTTTTGACATTGAAAACTATCCCCAtgaaaaaaatgtctaaatcAGACATTTGTAACATATGAACATTTTATTAGCTATACtgaaaaacactataaaaatattttaattaatatggaTATGTCACCTACAAATGGCTTATATAATATGAGCATGGGTCAGTAGTTTATCAGGTTGGCTAAAAGCCCATaagcaagattttttttttacattttctgataCAGCCGTCAGCTAATAATTACATTCTCACAAaattattaacttttatttttttaacttaactctttcataattatttattttatttatgtaacgTATCCAACAGATCATCATTAACTTATAAGTTAGTTACATTTGTGCTGggtattttgtcatttgtaaATCCAATATgaattcatttaatattttagtgattttgtggTGCAATAAAATGTGGTACATTTCTGATCTTTGTTGCTTCAACAGTTGTTTTGGATTATAAATAAAAGCGAAACAAATTTTGATCTTGTCAGATCACAGAACACGGTTCCAGTAATGTATGCTCTTGGACTGCTTGCCTTAACAAACTATTTGCATGTTTTCTTGCGCATCATCTTAAGAAGAGGCTCCCTTTCAGAACAATGGTCATGCAGAGTTGATGCTATATGTGCCGTATGGACTAGACACTGCAGGCTCCCCCGTTCCCCCCCACTTCTTCAAGCTCTGCAACAATGTTAGCAGTATTCATGCATCTATTTTCAAAAGCCAACATCTGGATATTAAGCTGGTGCAACTTGATCCTGGAGTAAACCAAGTTTTCAGTGCCTGTGAACCGGACATATGCTAATGAGAGCAGGGACAATATACAAATGCACTTCACATATATATGTTTctcttttctgtgtttctgtctgtgtttatgCTTGTAAGTATTTTCCCTGTTTCGCTTGAGGTGACAAATTATGGATTAATGGACTAATATCCATTAGTCGCACAGATTACTTCCTGGCTTGTCAAGTATTAGGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33580 lncRNA downstream 42123 39724455 ~ 39732479 (-) True G24964
XR_002652030.1 lncRNA downstream 250328 39514469 ~ 39524274 (-) True LOC111196215
TU33518 lncRNA downstream 275136 39499043 ~ 39499466 (-) True G24911
XR_002652028.1 lncRNA downstream 294258 39472824 ~ 39480344 (-) True LOC111196213
XR_002649667.1 lncRNA downstream 565337 39207714 ~ 39209265 (-) False LOC111191798
TU33623 lncRNA upstream 42243 39819276 ~ 39825981 (-) True G24992
TU33636 lncRNA upstream 68340 39845373 ~ 39848209 (-) True G24997
TU33637 lncRNA upstream 68340 39845373 ~ 39848209 (-) False G24997
TU33712 lncRNA upstream 398519 40175552 ~ 40230788 (-) False LOC111196341
TU33713 lncRNA upstream 398519 40175552 ~ 40230788 (-) False LOC111196341
XM_007259914.2 mRNA downstream 7939 39765455 ~ 39766663 (-) True LOC103031261
XM_022685486.1 mRNA downstream 17922 39755477 ~ 39756680 (-) True LOC103031565
XM_007259844.3 mRNA downstream 22612 39750022 ~ 39751990 (-) True LOC103035909
XM_022667892.1 mRNA downstream 39634 39733847 ~ 39734968 (-) True LOC111191823
XM_022667889.1 mRNA downstream 46017 39727514 ~ 39728585 (-) True LOC111191820
XM_022685492.1 mRNA upstream 16683 39793716 ~ 39795025 (-) True LOC111196293
XM_007259841.3 mRNA upstream 19365 39796398 ~ 39798840 (-) True LOC103034967
XM_022685501.1 mRNA upstream 38484 39815517 ~ 39816850 (-) True LOC111196295
XM_022667894.1 mRNA upstream 49885 39826918 ~ 39829162 (-) True LOC103038524
XM_022667895.1 mRNA upstream 58305 39835338 ~ 39836641 (-) True LOC111191847
TU33508 other downstream 316413 39455236 ~ 39458189 (-) True G24903
TU33468 other downstream 427733 39273635 ~ 39346869 (-) False LOC103043888
TU33946 other upstream 1437388 41214421 ~ 41218829 (-) True G25265
XR_002652122.1 other upstream 1660723 41437756 ~ 41442494 (-) False arhgap11a
XR_002652156.1 other upstream 2080005 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 2080006 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other upstream 2080016 41857049 ~ 41865844 (-) False LOC111196508

Expression Profile