RNA id: XM_007259875.2


Basic Information

Item Value
RNA id XM_007259875.2
length 1533
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103045608
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39214181 ~ 39222236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCATTATGAGGCTTCTCTGCCTCACAAGTAAAGTGATACCTCTAGTCACCATAGTGACACAGGTACTGATCACTGGTGTAGGGAAGAGTTACCCTGTGAACGCAGCCGCTGCTGTCTGATGCTCACCTGGATCTTCTttagtctttctctctgttcttttcTCGCTACAGTGTTTGGGGTGTTAGAGCCCTACTCTCAGCCAGTGGACACGGCGTGGTAAAATATTAATGCAGtaacctcactctctctctctctctctcttgctctccctctctccttctccctttTTTCTAATGTCACACACACTTTGGGGGTCCCTGCACCCTCTTCACAACACGAACCACGGAAGTCCCAAGTGAGCTGGCGCTGGCTACTCCAGCAGGGGGCCGATTTGGTGGAGATTCAGATGGCCCCCCAGTTTACCGGCAGCTGTGGTTTATAGTGGTAATGGCTGGTGTGTCTCTGGTGCTGCTAGCTGTTTTTCTGGCTGTTGTTCTGCACAAGGCCCTCAACCGGCCTCCATTCACCAGAGAGAGACCCCCGATCGTCCCCCTACACCTACAGCACAGGAGTCCAAGTGCAGTCTACCCCCCCAGCAATTCCTACCTTTTTGATACAGTACCCGACACAACCAGCTCTCCCAACAGCGTTATGCTGAAAAGCTTCACTATGCACCTGGAGGAAGTGGTGGACTCTAAGGTCCTTGAGGATGGTGTTTTACCCGAAGGTGAGATGGGGGTCGTTACTGTGTCAACGGTCCACATGTCCACTCATGGCCTTACCCAGAATCCCCTGCGACGGAGTGTGAGCCAGTTGATTGACAGGAAGGGGAGGGAAGACGATGAGGTGTGGGACCCCCACTTCAGAGCTCATGACAGTGGCATGtttgatgAGGAGTTTGTGGACACAGTTAAAGGCTTCAGCACTGTGAGGAAAGAACACACCATGTTCACTGACACCAACCTGTGACCTGCTCTACATGGAACCTCGGACCTCCTATAGCCGGTGGCCCTTTCAGGGTGGGATGAAGGTGGTCAGTAGGTGAAATGAGAGGTAAAGAAAGAGTGCATGGAtaagaaaaacagagacagatcCAGGAAACTAAGGCAGAGGGATCAGAAACACCTGCAGGACGTTGGTGGCCTCCTGTGGATGCAGAGGGACTAACAACATGTTTTTTGAAAGACTAGAAAGaagaatagaatagaagagGAGTGACCTCATTTAGGGGTCTTTGTAAAGCACGGAACGTCCAAGTTTACCAAAAAGGTCCTAAAACCACCAGTGTTAGGCTGGGGCAGGGTCCAAGCTAGCTGAGTTACACAGGATATGATCCATTACAGCCAGAGAACAGAGGATATTTActaaaatagtaaatattttaatgttgattCTGTTAAGTATATATCTCATTAACTTAATTGGTAttctgtattataatgtatgtaATTGTTTGTACCTGCAGTAAACACTGACCTTTCTATTACCAACcaacaataaatgttttttttttttttttttttttacagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33289 lncRNA upstream 22010 39184526 ~ 39192171 (+) True G24742
TU33292 lncRNA upstream 25847 39187780 ~ 39188334 (+) True G24743
TU33285 lncRNA upstream 34064 39173975 ~ 39180117 (+) True G24739
TU33282 lncRNA upstream 38643 39173837 ~ 39175538 (+) False G24739
TU33277 lncRNA upstream 69363 39139295 ~ 39144818 (+) False G24735
TU33307 lncRNA downstream 20206 39242442 ~ 39251843 (+) True G24748
TU33343 lncRNA downstream 125410 39347646 ~ 39347962 (+) True G24775
TU33338 lncRNA downstream 160006 39382242 ~ 39387475 (+) True G24772
TU33365 lncRNA downstream 183580 39405816 ~ 39408899 (+) True G24790
TU33377 lncRNA downstream 214746 39436982 ~ 39439002 (+) False G24796
XM_007259879.3 mRNA upstream 42226 39155626 ~ 39171955 (+) True rars2
XM_007259881.3 mRNA upstream 60753 39147532 ~ 39153428 (+) True LOC103047239
XM_007259888.3 mRNA upstream 280331 38928638 ~ 38933850 (+) True gjb7
XM_007259896.2 mRNA upstream 414080 38747477 ~ 38800101 (+) True rev3l
XM_007259899.3 mRNA upstream 471597 38729312 ~ 38742584 (+) True traf3ip2
XM_007259866.3 mRNA downstream 143571 39365807 ~ 39368293 (+) True LOC103043278
XM_022685382.1 mRNA downstream 166631 39388867 ~ 39397878 (+) True eif2b2
XM_007259862.3 mRNA downstream 190447 39412683 ~ 39427771 (+) True LOC103042020
XM_015608501.2 mRNA downstream 446274 39668510 ~ 39669815 (+) True LOC103032515
XM_007259846.2 mRNA downstream 472417 39694653 ~ 39697487 (+) True LOC103036628
TU33254 other upstream 168400 39045170 ~ 39045781 (+) True G24719
TU33085 other upstream 266959 38939357 ~ 38947222 (+) False G24583
TU33086 other upstream 266959 38939357 ~ 38947222 (+) True G24583
TU33100 other upstream 287199 38925696 ~ 38926982 (+) True G24594
XR_002649597.1 other upstream 496746 38667509 ~ 38717435 (+) False fyn
XR_002652014.1 other downstream 102847 39325083 ~ 39340971 (+) True LOC111196173
TU33356 other downstream 171606 39393842 ~ 39397829 (+) False eif2b2
TU33591 other downstream 597040 39819276 ~ 39825718 (+) True G24972
TU34411 other downstream 3169404 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 3169409 42391645 ~ 42392938 (+) False G25601

Expression Profile