RNA id: XM_022685269.1


Basic Information

Item Value
RNA id XM_022685269.1
length 4575
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC103047758
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39131248 ~ 39144751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGCCGAGCGGCACTCCGCCATTTTACATTATCTGATGAGGCGGAGCGGAGCGGCGGGGCTTCAGACTCGACTCCTGCGCGTGCACTCCTAAACCCCGGCTCACCTACACGGACAGACGCTGCGCCCCGTACACCACCCTCTCCAGATTTCTGGCGGCATGGCTACAGAACATGTAAATGGGAACGGTACGGAGGAAACGATGGACACATCTGCAGTTACCCACTCTGAGCACTTCCAGACTTTAATTGAGGCTGGGTTACCACAGAAAGTTGCTGAAAAGCTAGATGAAATTTACATAGCAGGCCTCGTAGCACATAGCGATCTGGATGAACGCGCCATTGAAGCCTTGAAGGAGTTTAAAGAGGAAGGTGCATTGCAGGTTCTGTTACAGTTTAAAGAAAGTGACCTATCTCATGTGCAAaacaAAAGTGCCTTTCTCTGTGGCGTGATGAAGACACATCGACAGAGGGAGAAGCAAGGGACCAAAGTTACAGATTCCAACAAAGGaccagacgaaacaaaaattaaaGCTCTGCTTGAGAGAACCAGCTACACACTCGATGTCACGACGGGGCAGCGCAAATACGGTGGCCCTCCACCAGAGTCTGTCTACATTGGGACCCAGCCCACAATCGGCACAGAGATATTTGTGGGTAAAATCCCACGAGACCTGTTCGAGGATGAGCTGGTGCCTCTTTTTGAAAAAGCTGGGCCCATCTGGGACCTGCGACTGATGATGGACCCGCTGAGTGGACTGAACCGCGGATATGCATTTGTCACTTTCTGCACTAAAGAGGCGGCACTAGAGGCTGTAAAGCtgTGTAACAATCACGAAATTCGACCAGGAAAGCAGATTGGTGTGTGTATATCGGTGGCCAACAACAGGCTCTTCGTGGGTTCTATTCCTAAGAACAAGACAAAAGAACAGATTGTCGAAGAATTCGCTAAAGTCACAGAGGGCCTGAATGATGTTATCCTGTACCACCAGCCTgatgacaaaaagaaaaacagagggtTCTGTTTCCTGGAGTATGAGGACCACAAGACAGCAGCGCAGGCCAGGCGCAGGCTGATGAGTGGGAAGGTGAAAGTTTGGGGGAACGTTGTTACGGTGGAATGGGCTGACCCTATTGAGGACCCTGATCCAGAGGTCATGGCCAAGGTAAAGGTATTGTTTGTCCGGAACCTGGCAAACAGTGTAACAGAAGAAATACTTGAGAAATCCTTCGGCCAGTTCGGGAAGCTGGAACGAGTTAAGAAGCTGAAGGACTACGCTTTTATTCACTTTGACGAGAGGGATGGTGCTGTCAAGGCACTGGAGGAGTTAAATGGGAAGGATTTGGAGGGTGAAAACATTGAGATTGTCTTTGCGAAGCCCCCAGACCAGAAGAGGAAAGAACGCAAGGCCCAGAGACAAGCAGCCAAAACgcaaatGTATGACGATTACTACTACTACGGTCCCCCTCAAATGCCCCCTCCCGCCAGGGGGCGAGGGAGAGGCGGAGCCCGTGGTGGCTACTCCTACCCTCCTGACTATTATGGCTATGAAGATTACTACGACTATTATGGCTATGACTACCACAACTACCGGGGCGGCTACGAAGACCCATACTTTGGCTACGAAGACTTCCAGCCGCCAGCGCCCCGGGGGGGCCGTGGAGGTGCCAGGGGTGGAGCCAGAGGGGGTATGTCCCCAGCACGAGGCAGAGGAGGGGCGGGCCCTCCACGAGGCAGGCCAGGATTTCCACAGCGTGGAGGCGGAGCTGGGCGTGGCCCGAGGGGTGGAGGAGGCATAGGAAGAGGAGGGCCGGCACCGAGGGTCCGCGGGCAGGGGAAGGGGCTGGAGAGTGGTCCTGAAAAATCCCTCTGAGGGTGAAGCGCAGCACCTGGGTGTTTTCCACTGGAcagcgcccccccccccccccctggaGGCCAGCGGTAAGGTCTAGTATGCAGCGGTCCACTTCTATTCCTGCCTTACGGAGAGAAACACAAGCTACTCTTAGACTGCCACTCAAGATCACCACAGCAGAGGCTTCACCTTTACTTTCACTATTTAATGctgttctgtctgttttttttaacaatctgATGTGTTCCAGAGCCCCAGCTCCTGACTGCCCTGCCCCACCCCAAAGAAAACAGCCTGCCATTTAGAATTCAGTGTAACTGAAGATGGTGCTGCTGTTTGCCCCAAGCGTTCTTATCCTTTATGTAATAACGGAagttttttgcacttttgtatgtttttgtagTTGCTCAGAGggtttttttaaactgcagctGCATCATGGaataaacatgtaaatgtaatgttttttacataatgttttGCAGGTTTATTAGGTGTAAACCTTGTGGCCTGATTGGTCAGGTATTACAGAAAAAATGGTTCATTTAAGAACCTTTAGTGTGCTTTTGTTGTTGCTGTTATTGTTACTAAAGGAGCAGTTCACTCAAAACTATAATTCACCCATTTCTCCCACTTTAGCCCAGATTGTAGCCGAAACTGTTTTGGTGTCTGAAGTTttgcttctttaattttagtGCAGAACCTTTGCTACATTGGCCTCATAGGTTCAAGTCTCTTTGGTATGCTATATTTTTCCAATGATTGTTAGGCTTCATAACTCAGATGGAAAAacctaaaagaaaaaagaaaacctcaGTCACCAGTGAAATCTAGAGTTATCAGACTACATTTGTGGTAGGAGGGTGAATTTGTGTAAATTAGGTTTTTGGGTGAAGTGTCCCTTTAAAGGGTCTGTTAACTACCTCAGTGTGGAGGCGGGAGACTACCCTCTCTgtaatgtatataaacacacgGAGACTCTTAAAGAGCGCAGGGCTTTTATACTCTATTTTATGCACAAAGGCAACAGTGGAGCCAATCAACTTtagtgtataatagttttataatGCTGTTCCGATGATGCTGCGagcagtgtgtgcatgtgtgtgagagagagagcgaatgtGAGAATGAGAAAGTACGtgtgaaaataaatgacactCTGACGAGTCTAAACAAGCCTTGCTTTTGTCTCCATGGCTCTAAAAGCTGCCCCTCCTCCCAGAAGTGTGTAGTTACTGGCTGTATTATAATTTAGGAAGGATTTGTtcatgtcgttttttttttttttttttttgtgaagcttTGAGCATAATGGATAAAATTTTCTAATTTCCCACAGATAGACAAGTGTTCATTTCTAATGTAAATGACAGCTGTTAATTTCATTATTTGGCAAAattgtttaacttttttgtttgtttatatggttgtttttttgtttgtttgtttaccaggGTCTACTCCTGTAAACATGTGCAACATGGCTGAAGCACTATCTGTTTTCAGCAACACGAGCTTGCCTGGTTGCAGACACTGAAATGGCAATCAAAAACTTGTaataaaaaagtagtaaaataGCAAGAATTCAGCTGAAATGTCAGGGTGTTTATGCTACAATGGACCTCCCCACAATCTGCCCACTAATTTTCTCCCATAGCTACTTGTGATGGGTTGACAACTTTCCAGAATGCTGGTATCAATCTCATTTAACTGATTTATAACatgatttttgcattttgtaaaaCTCTAATCTGAACAGTAACGGAAGAACATGTTTGTGAAATGTGGGGACAAGTTAGCCAGCTTTACTCTCATTGGCTTTTGTTAATTATGAATGCCTTGTCTGTACTTCGTCAAACCCTTCTGTTAAGAAAAGGATTTAATAATATACTATCAATTAATTGCATTTTCCAAGATGAACTAAGCAGGGTCTTTTTCTTGGCCAGCAAGAGAAGAGTAAGTAATTCAGAGCTGTCCTCAATTTCAGCTTTATTGGATTAAAAAACGAGTGTTACACACCTGTTAATTGGTTAACTCTTTACTGAAACCTAAATTAAGTCAGCCTTGCATGCTAATGTTTCAAGCAGATATTGGCCACCAGTAGTCTTTGGATAGATGTCAAACTGATTAGTTTATTGATAGGAACATTTACTTTTGCTTTTAaaggtaaatttattttaatatgccTGTTTGGTGACgcatattaaatatgtttgaacTGTGATGAACATAAATGCAGATGTTGTGCAGTTAAGTCTAATTTCACTCTTCTTTAATGTGTAGTAAACCCCAGTATTCTTTTACATAACATCTTCCATATTTGTAGTGTTTTGAAAATGCTAAAAGTATACAAAATCTTAGTCTGAATTGAAGGCAGTCATTTTTATTTAGCACAGTGTCTGTAACTAGACGGCTCCGTCACTTTCCTGGACAAACTATTAAAGAAAGGGGCCTTTCCTTATTAACGTTTTAAGGCTGTATAGTGTGACATGCAGCGTCATCTTGAGCATGTTAGCGGTAGCAGTGATTTAGCCGGCTCTCGCACAGCCTTTACAGGGTTAAATTGGTACTAAAGGTTTCATTAAAGATGCTGGTAGAATATGCTGACTGGATTTTGTACACAAATTTTCATCCCATCTAAACTTTGTTTTAAGGATGTGTTTGGATTTAAATGAACTATTGgtgcatttttttgcattgttgcaaataaaatgtttt

Function

GO: NA

KEGG:

id description
K13160 SYNCRIP, HNRNPQ; heterogeneous nuclear ribonucleoprotein Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33428 lncRNA downstream 72682 39058005 ~ 39058566 (-) True G24843
TU33427 lncRNA downstream 73347 39057567 ~ 39057901 (-) True G24842
TU33426 lncRNA downstream 82291 39048757 ~ 39048957 (-) True G24841
TU33250 lncRNA downstream 169195 38959682 ~ 38962053 (-) False G24716
TU33424 lncRNA upstream 2809 39147559 ~ 39153451 (-) True G24839
TU33456 lncRNA upstream 43032 39187782 ~ 39188278 (-) True G24860
TU33461 lncRNA upstream 62730 39207480 ~ 39209113 (-) True LOC111191798
XR_002649667.1 lncRNA upstream 62964 39207714 ~ 39209265 (-) False LOC111191798
XR_002652028.1 lncRNA upstream 328074 39472824 ~ 39480344 (-) True LOC111196213
XM_015608507.2 mRNA downstream 3215 39099426 ~ 39128033 (-) False bub1
XM_007259887.3 mRNA downstream 3216 39099426 ~ 39128032 (-) False bub1
XM_015608508.2 mRNA downstream 3216 39099426 ~ 39128032 (-) False bub1
XM_007259886.3 mRNA downstream 3216 39099426 ~ 39128032 (-) False bub1
XM_007259885.3 mRNA downstream 3216 39099426 ~ 39128032 (-) True bub1
XM_007259876.3 mRNA upstream 29240 39173990 ~ 39192081 (-) True slc35a1
XM_007259878.3 mRNA upstream 54688 39199438 ~ 39202997 (-) True LOC103046220
XM_007259872.3 mRNA upstream 79133 39223883 ~ 39246614 (-) False LOC103044694
XM_007259874.3 mRNA upstream 79133 39223883 ~ 39246614 (-) False LOC103044694
XM_007259871.3 mRNA upstream 79133 39223883 ~ 39246614 (-) False LOC103044694
TU33229 other downstream 204336 38925696 ~ 38926912 (-) False smim8
TU33230 other downstream 204336 38925696 ~ 38926912 (-) False smim8
TU32960 other downstream 853656 38275472 ~ 38277592 (-) False ndufaf4
TU32826 other downstream 1186902 37938829 ~ 37944346 (-) False fam76b
TU33468 other upstream 128885 39273635 ~ 39346869 (-) False LOC103043888
TU33473 other upstream 164980 39309730 ~ 39324690 (-) False batf
TU33467 other upstream 194276 39339026 ~ 39346869 (-) False LOC103043888
TU33469 other upstream 194276 39339026 ~ 39346869 (-) True LOC103043888
TU33508 other upstream 310486 39455236 ~ 39458189 (-) True G24903

Expression Profile