RNA id: XM_007259887.3


Basic Information

Item Value
RNA id XM_007259887.3
length 5526
RNA type mRNA
GC content 0.51
exon number 26
gene id bub1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39099426 ~ 39128033 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttcagacttccagctccGACCCCGTTAGAgatatttctgtctctctctcacacactcgcacacacatgCGCGATTGTGCGCGCACACGATCTTTCCTGCCCCTCATCTCTGAAATTTATTTAcacaattcggtaaaatcaaagaaactcctcagAGTTTTCCCCAGATCAttatataaaagcattttaGCACTATAAAACAGAAGGCTGGACAGATTCAGACATCACTGGGTGTTTTCCTCCCTACACACGGAGCCATAGCTTCCACTCGTGAACGCGCATTGCGAGGGCTCGGGGGCGGGGCTCGCTGTTCTCCAATCCGATTAGTGCTTTGGGTCGGAGGAGCGCTGCGATTGGTGGCAGCGGGTGATTTGAAAACATTTGTGTCGTTAGAAGAGACGAAGAAGAAGAGTCGGACCTGCGGAGTTTATTTagataataatgttaaaaactaAGGTTTAAATAAGTTGTCGGGTTACGGACTgaggaggagaaaaataaacaatggaTATTAacagttatttacaGCAATTTGAAGCCACCGTGAGCAGTTATGTTGGAGAAGATCCTCTTGATCCATGGGATAAGTTTGTGGAGTTTCTGGAGTGCAGGCTGGCAGCAGAGGAGAGGAGTAATCTGTGTGTGGTGCTGGAGAGGTTGGTTCAGACGTTTCTGCAGGATAAACGCTACCGCAATGACCCCAGATACATCAACCACTGCATCAAATGTGCGGGGTATTACGGAGAGCCCATAAAGCTGTACAGTTATGTGCACAGTCTGGGTGTGGGGGCTCGGGCAGCAGGGCTGTACGTGGCCTGGGCTCAGCAGTTCGAGAGTAAAGGTCTGTTCACTCAGGCTGAGCAGGTCTACCAGAGAGCCATCGAGAACCAGGCGGAACCCATGGACACGATCCAGGAGCAGTACAGGCTGTTCCAGAGTAGAATGGGTAAAAGCCAAGCAGCCTCAGATCATGTGAGAAATCCTCTGCAAAATTCCCAGCTGATGAATCAGAATCCACGCCACAGGGAGACGCTCCAGCCACACTGTAAGGAGCCTGACAACTCCCCACTCCCGGCAGACCGAACTATTCGCATAATCTCTCGTTCTGAGAATAATCCAATGCCccggagcagcagcagtgtggagAGTGTGCCGATGTATTGCGTGAAGGAGCTGGAGTGTGAAGGTTCTGAACTTTCCTTTGAGGAGCTCAGAGCGCGGCGGTACTTTAGCAAACGCCAACAGCTGGAGCTGCTGAGAAAACAGGaGGAAGTGATATGGAAGcatgaggaggaagaggaggaggtgaTAAGGATGAAGAAGCTGCTGGAAGAGCTGAACAGCAAACTGAGCACTGAACAACAGGAGACCAAACACACATTCCTGCAGCAgGTTCCAGCTTCCAGACTGAGCCTGTCTCTGAGCGCAGCTTCACAACTTGCACACAGCAGTGCACTCAGTGCAGCTGTGAATAGGCCATTGGACCTGGACACACAGGCTCCAGTTCCACTACAGCTGCAAGACCAGAGAACCGCAAGCGTGTGTGAGAGCCAGGCTGAGCGTTCGCTTCTAGAAAGTTGCTCTCAGAGGCTGGCAGTGTTTGAAAGAGACAGATCTGAAAAAACAGAGATGGATGGAGGAGATGCTAATGCAGACAACGTGATCATGGACATGTTCCAGGCTCCAACGCTGCTGCAGGACTCCGTCTTCAATACTACCAGCCAGGTGGCTGATGACAGCTTTGAGAAAAACTGCAGAGTATACGGTTTTGCCCCATCTGTAGCTAATCCACCCTCCTCAATGTCGTTCAGGATATACCAGGATGAAAATGTGAAGATTGGAAGtgagGAACAACAGGTGGAGAAGAGCAAACCAGCAGCTCGAGCCCTGATGGAGATTCCGGTCTCCAAACCCAATgtcaCTCCTGTAGGTCCGGAGTCTCTGACAGACGAGAGTGCGATGTGGGGTCCTCAATATGCCTCCATAACTGCCTGTCCAAATCATACTCGTGATTTTGCCATGGCTGCCCACCTGGTATCCACCCCCCTCCACCCCACTGCCCCGTACACCTGGGACACAGAGCTCAATCAGGTAGAAAACACTGCCAGAGGATTTAGTGGGACAGAGGAAAACCTGTATCAGCGCCAGCCAGCCAAACTGAGTCCAATCCTGGAGCAGAGTCCTTCTGATGAGAAGCCGTCTGAAGTTCCTGAGTGCAGTCTGAGGGCTCAGGGCACCATCGTAGGAGAGGGAGTGAGTCTTCCTCAGCAGAACCAGACGCTGACCCACGACCAGACCAGCTGCAGCATCGGCAGGCAGACGCTGGTCCCCCTGGCTTTACATGATCACACTGCCGAGGCCAGCAGAGCCCTCAACTCCAGCACTAAACCTAGCTGGAGTGTCTACCAGAGCCCAGAGAGAACCAGCCAGACAGGTTCTAACACAGAACCTGTGTCCAACAGCATGCTGTCTGTGAAACAGCAAATAGCTCACCAGCTCAATTCATCTAATCTACAGCTTAATTCCAGCTCTAGCATCAAACCCAGCTGGAGCATCTACCAGAGCCCAGAGAAAACCAGCCATACGGGCTCGAACAGAGGGCTCAACTCAAGCAGCATGCTGTCTGTAAGAGAGCCTCAACCGATCCAATCCAATGCAAATGGCCTACAGATGAACTCTCTATCTTGCTCCCTTGCTGAGGCCAGCAATGCCCTCAACTCCAGTGCCAAACCTAACTGGAGCATCTACCAGAGCCCAGAGAAAACCAGCCAGACAGATTGTAACACAGAACCGACCTCTAACAGCATACTGTCGGTAAAGCAGTACCAAGCAGACCAGTTCAATTTACCTAGCATGCAGGCtaactccagctccagcactaaACCCAGCTGGACCATCTACCAAAGCCCAGAGAAATCCCACCAGGCTAGTTTTTGTGCGGAACCCAAACAACACTCAAACAGCATGCACTTGGCAGTGGGAGAACCCAAACAGGACCAGTTCAGCTCAACTGGCTTGCAGGTTAATCCAGACAGAACCATGAACTCCACCACCCAAAGCCCAGAGAGAACCCAAAAGACTCAATTTAGTGGGGACCTCCACTCAACCAGCATGCATTTAGTGGCAGAACCCAAACAAGACCAGCTTAACTCATCTGCCATTCAGCTGAACTCCAGCTGCAGCACCAAACCCAGCTGGAGTATTTACCAGAGCCCAGAGAGAACCAGTCAAATGGGTCACAGCAGGGAGTTCAAGGCAGACCAGCAGGTTAACTCAAACCAAGGGTTCAACTCTTCTAGCCTGCATTTAATGGGAGAGCTAAAACCAGACCAACTCAATTCCTCCATCAATATGTTTTCTGGTCAGGGTGAGGCTGATATTCTCTTGCCCAAGAAGTCTTTTCACCGGCGAAAATCCGAAAAACAGCTGAACTTCGAGAGCCTTCAGGTGAGCCGACCTGTATCACACCAGTCCTGCACGCTGCCAGAGAGCCCAAAACCACAGCCCAGAATAATCCAGGATGTTCCCATGAGTCCAGACCCAATCCCAGGGTCCGACTGGCTTCAGATGGACAGTCCAGTCCCGCTCTCTGAACCCAACCTGGATGTGATGGTCAGGTCAATGAACAGATCCCAGACAATTCACAGAGAAACCCCCGGAGCTCCTGTTTCCAGGTCCAAACTCAGCTGGAGCGTGAACCAGACCCCAGGGAGGCCATCTGAACTACAGTACTTCCTGCAGAGTCCTGAGCCCATGGAGGAATCAGATCCGCATCAGTTATCAAAGCTGGAAGAGTCTGGACTTCTGCTCTCCAAGAGATCCTTTAACAGGCGCAAATCGGATAAGAGGGTATTGGAGAAATCCCTCTTGTCGAGTCAGAGGCAGTCCTCCAACCAAAACCAGGATGTTCCAATGAGTCCGGAACCAATTTCGGGGCTGAACTGGCTCTGTCCAGAGAGTCCAGCCCGTGTGACTGAGTCTGATCTGGACGTCATGATGACACCTCagcaaaaatctaaatcagTGGATGCTTCTGCCCAGCTGCTGCAGTGTGATGTTCCAATGAGCCCCCTGCAGGCTTCCATACCTGATTACACTCCCTCAGTGTTGGTGTCTGACCCGTGGGATGAGGACCTGATAGATTCTTTACTCTCCAGCCTGAAGACGCCCCTCACCTCATACCCGAACCTCAGCCTCTGCACTCGAGGCCTGCCCACACTCACCCCCAAGATGTCCGTACAGATGGGTGAGGACTCTCTGCGGGTGGACTTTGTGTTGGGACAGGGTGCTTTCGCCACCGTTTATCAGGCTACCAACCTTACAACCTCACAAAAATTCATCCTAAAGGTGCAGAAGCCGGCGAACCCATGGGAGTTTTACATCAACAGCCAGCTAAATGCTCGAGTGCTGCGGAAAGAGCGTCACCTGTTCAACCAGCTCCACTCCGCTCACCTGTTCACCAATGGCAGTGTGCTTGTGGGGGAACTGCACAACTGCGGGACTCTGCTGAGTGTGGTGAATCTGTATAAGAGCCGCAGTGAGAAGGTGATGCCCCAGCCGCTGgtgctgtacttcagcatgTGTATCCTGCAGATGGTGGAGCAGCTGCATCAAGCCAAAATCATCCACGCCGACATCAAACCTGACAACTTCCTGCTTGGAGAAAGGTTTCTGGAGAACGAGGATTTGGATGCTGAGAGTCTGGATCACGGCTTGGTTCTGATAGATTTTGGTCAAAGTATTGATATGACCCTGTTCCCTGAGGGCACGGCCTTCACTGCCCGCTGCATGACTTCTGGCTTCCAGTGCACAGAGATGCTGAGTGGCCGGCCGTGGAACTACCAGACTGATTACTTTGGCATTGCCGGCACCGTGCACTGCATGATCTTCGGGTCATACATGCAAGTGAGAAATGAGGGTGGAGTTTGGAAAACGAATGGCATTTTTAAAAGGAATCCTCACAGTGATCTATGGCAGGAGTTTTTCCATGTGCTGCTGAATGTTCCGGACTGTAACTCTGCCTTATGTTTGCAGAGTTTGCGTGAGCGTCTGTCTGTGGTGCTGCAGGAAAACTACAGCAACAAACTGCGCGGCCTTAAAAACCGACTGGTGGTGCAGATCCTGGAGAGCCGCGGGGCTCGCAGATAGTTTTCTACCTTCTgtttttctaacttttttttaactagtaTTTTAAATGAGTCCTGCTGCGTTTATTTTTCCGAACACCAAAATCTTCAGCTACTCAGGTGCCACTGTATTACCTGGATCAGGTGAATCCGATGGATTGCATTAGCGGTGGGACTAGATCAGCCACACCTGAGTGACCTAAGTGGATGGAACGAGGAACCAAGGCACTCGGGAGTTATCTgtagaaggaaaaaaacaactgaaacaatcttttatctgctttacTGCTTTGaatgtaaactgtaaaaaagaagactgattgattttgttttgtaaagaaaatcaataaagctaaaaaaaatcacagttccATTAAATTTTCATTCTGTTGCGCTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33428 lncRNA downstream 40860 39058005 ~ 39058566 (-) True G24843
TU33427 lncRNA downstream 41525 39057567 ~ 39057901 (-) True G24842
TU33426 lncRNA downstream 50469 39048757 ~ 39048957 (-) True G24841
TU33250 lncRNA downstream 137373 38959682 ~ 38962053 (-) False G24716
TU33424 lncRNA upstream 19527 39147559 ~ 39153451 (-) True G24839
TU33456 lncRNA upstream 59750 39187782 ~ 39188278 (-) True G24860
TU33461 lncRNA upstream 79448 39207480 ~ 39209113 (-) True LOC111191798
XR_002649667.1 lncRNA upstream 79682 39207714 ~ 39209265 (-) False LOC111191798
XR_002652028.1 lncRNA upstream 344792 39472824 ~ 39480344 (-) True LOC111196213
XM_007259892.3 mRNA downstream 88334 38957039 ~ 39011092 (-) True htr1e
XM_022685223.1 mRNA downstream 145981 38939398 ~ 38953445 (-) False znf292
XM_022685270.1 mRNA upstream 3216 39131248 ~ 39144750 (-) False LOC103047758
XM_022685269.1 mRNA upstream 3216 39131248 ~ 39144750 (-) True LOC103047758
XM_007259882.3 mRNA upstream 7786 39135818 ~ 39144751 (-) False LOC103047758
XM_007259884.3 mRNA upstream 7786 39135818 ~ 39144747 (-) False LOC103047758
XM_007259876.3 mRNA upstream 45958 39173990 ~ 39192081 (-) True slc35a1
TU33229 other downstream 172514 38925696 ~ 38926912 (-) False smim8
TU33230 other downstream 172514 38925696 ~ 38926912 (-) False smim8
TU32960 other downstream 821834 38275472 ~ 38277592 (-) False ndufaf4
TU32826 other downstream 1155080 37938829 ~ 37944346 (-) False fam76b
TU33468 other upstream 145603 39273635 ~ 39346869 (-) False LOC103043888
TU33473 other upstream 181698 39309730 ~ 39324690 (-) False batf
TU33467 other upstream 210994 39339026 ~ 39346869 (-) False LOC103043888
TU33469 other upstream 210994 39339026 ~ 39346869 (-) True LOC103043888
TU33508 other upstream 327204 39455236 ~ 39458189 (-) True G24903

Expression Profile