RNA id: XM_022667294.1


Basic Information

Item Value
RNA id XM_022667294.1
length 2589
RNA type mRNA
GC content 0.42
exon number 11
gene id traf3ip2
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38729312 ~ 38742584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGCATATACAGCGCTGTGAGTTCCGGGAAGCTCCTCTCACAGGAAGAGTGATCACACACCTGCGCAGATGGTGTATTGTTGATGCTGTTTCAGTAAGAGTGGGACTGAGGCTGTATTACATAATCTCTGCTGAATAAAGGACCTGCACAGCGATGACATCATTTACAGatGTGTCCTGTTGTCACCCAAGTGTCCCGGTTGAGATGGACGAGTCGATGACCTCATCATCGCTGAACTTGGCCTGGCCggtgtgtgagcagtgttcgGGACAAGCTAACTGTGTTAACGTCACTGTGAACGATGTAGCTAAAGTGGATTACCCAGAAGGCTCCCTAAGGCATCCAGAGTCTAGATCAGAAATCACCAAACCTGTCTATCCTTTAGCCACACCCCCCTCTGACAGACATTGGATGTCACGTGAGGCTATGGATGGATATTTACACCACCCATACCGTCCCCCAGTGGCCAACCCTGACAGTTACAGACAGCGCCCTCGTATGGATGACCTGTGTGAGGGTTTCTCTGCTCTCTTCCCTCGCGAGCAGAGGAATCCTCCTAGGGAGGATGATGAGGAAAGCCTGGAGATGCCTGGCCCTCTCCGATCAGATGTTGAGGGCATTGAGTATAGACTGGCAAATCACTATAGACACCCTGGGCATGATGGACACTGCCAGCTGCCAGCCAATGCTATGGACGCTCGATGCCCCAGGGGTTGCCACCGTCAGCAGCCCCCAGTAAATCCTGCCTGGTTTGATCAAAACCCACAACCCAGGCCATCCCCACATGTTCACAAGGTTCCAGTGGCGACACCACAGGCCACGTCCACGGCTCCTGTGAGAGAGCTGATGTCGGAGGTGTGCGTCCAGCcgtctcagccaatcacaggccCCACACCCATGCAGGAAATGAGGAGGACCATTAGTCTCCCTGACAATTGCCGAAATGTGTTTATCACCTATTCTGTGGACACGGCAAAGGAGATGTTCCCGTTTGTGAGATTCCTGATGAGTCAAGGCTTCAGACCTGCTATTGATATCTTTGATAACGCTGTGCGGCAGATGGACATGAATAAGTGGATGGATAGCTATTTAAAGGATAAATCTGTGCTCATTATTGTGGTCATCAGTCCCAAATACAAGATTGATGTGGAAGGGGATGGGTCAGACCAACACGgactacacactaaatacatatacacacagATCCAGAACGAGTTTATCCAGCAGCGTTGTCTGAATTTCAGACTCGTCCCTGTACTCTTCCCCAATGCCAACCAGAGTCATGTTCCGATGTGGCTGCAGAGCACCCGGCTTTTCCACTGGCCTCAGGACGCTCAGGAACTGTTGTTACGGCtgctgagagaagagagatataTCCCTCCTCCACTGGGGAAGGAGCTGACCATTACCATCAAACCATTAACATCTCACAACTAACACTAACCTTTAAACTGCTGTGCAGTATCATATAAACACTGgtgaaaaaaatggtgaaaaaatcTTAATAAGCACAATCGTTCAACTTTTTAAAACCACAGAGATTTACCAAACAATAAAAATCTGGATGTGTCCAGCGTTAGTTAGTGACATTTACCTAGCATTTCCTATTATAAACTAAAGAAGCACTATTCggatattaaatatgattttcttAGGGTCAGAGTTCAGTCATGATATATTAATTTGTAAGGGACGCTGGCAGTGAAGCTAGCTATAATTCCAGATTTCAAAGTAGCACTTAGCAGTTAGCATGATCTGTGTTTTTAAGTTCGTCTAGTTTTTTTGTgccaaattaacattaaaaaactaaaatagtgCATACTTCACTATCAGCTCCTAAAATACAACTATGTTTCTACTAACATACACGTGTACTCAATACTCTAAAAGTGGAGAACTATTTTTCAACAGTTTAGAAGAGCCATATCTGAGGTTTTAGTCTTATAACACTTTAACCAGCCAAAAACCATTcaggtgttttttattgtcttttcatggcacaataaagttaaaaaaaatataaatgtacatatatttaccAAAAAATAATCGTTCAACAGCCTATTTTGAACATGTATGTCATCACTGTAGCGCTCCAGTTCACACTGTCCATACATTGCAAGAGAAAAGCCCTCTGCAATGCAGTAACAGCATCTTACCACAAGATGTCCCTCATGTTGTACAGCAGTTACATACATCCTGTacttatataaaaatgtgttctaGGTTATAAATAGGTTCATATGGAGATTTTATGTAAAAGTGaaatttataattattgttgattaattgatttctTAGCACAAAACATAATTTGATTTCTGCAGttatctaattaattaattggtgATGTTAACAGCCTACTCTGAGTTTTACAGTTGGTTAAGGCCAAGAAATCTGATTAAGAAATATGATTTCTAAACAAATGAATAAGCTCAGTCTGCACTTCCAGATAGAACTAAGATAagactacactacactatatctGCTTTATAAGCACTGTACTTTGTGCACActtttaaaatgctgttaaaATTATACTGTGCcacaataaaatactgtatattaaaattaCAGTGTCTAATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33037 lncRNA upstream 100351 38628768 ~ 38628976 (+) True G24546
TU33034 lncRNA upstream 108847 38620242 ~ 38620480 (+) True G24543
TU33033 lncRNA upstream 111461 38617486 ~ 38617866 (+) True G24542
TU33032 lncRNA upstream 111894 38617102 ~ 38617433 (+) True G24541
TU33024 lncRNA upstream 136800 38590941 ~ 38592527 (+) False G24535
TU33051 lncRNA downstream 62756 38805340 ~ 38809014 (+) False G24559
TU33055 lncRNA downstream 62756 38805340 ~ 38809014 (+) True G24559
TU33064 lncRNA downstream 74650 38817234 ~ 38821337 (+) True G24564
TU33076 lncRNA downstream 126150 38868734 ~ 38877657 (+) True G24575
TU33080 lncRNA downstream 140704 38883288 ~ 38884012 (+) True G24579
XM_022667313.1 mRNA upstream 3279 38721677 ~ 38726048 (+) True LOC111191700
XM_007259901.2 mRNA upstream 11892 38667509 ~ 38717435 (+) True fyn
XM_007259902.2 mRNA upstream 11892 38667509 ~ 38717435 (+) False fyn
XM_022667246.1 mRNA upstream 11892 38667509 ~ 38717435 (+) False fyn
XM_007259906.3 mRNA upstream 66687 38645331 ~ 38662640 (+) True LOC103028301
XM_007259896.2 mRNA downstream 4893 38747477 ~ 38800101 (+) True rev3l
XM_007259888.3 mRNA downstream 186054 38928638 ~ 38933850 (+) True gjb7
XM_007259881.3 mRNA downstream 404948 39147532 ~ 39153428 (+) True LOC103047239
XM_007259879.3 mRNA downstream 413042 39155626 ~ 39171955 (+) True rars2
XM_007259875.2 mRNA downstream 471597 39214181 ~ 39222236 (+) True LOC103045608
XR_002649597.1 other upstream 11892 38667509 ~ 38717435 (+) False fyn
TU33020 other upstream 143049 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 347017 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 492286 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 631003 38092974 ~ 38098324 (+) True G24390
TU33100 other downstream 183112 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 196773 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 196773 38939357 ~ 38947222 (+) True G24583
TU33254 other downstream 302586 39045170 ~ 39045781 (+) True G24719
XR_002652014.1 other downstream 582499 39325083 ~ 39340971 (+) True LOC111196173

Expression Profile