RNA id: XM_007259906.3


Basic Information

Item Value
RNA id XM_007259906.3
length 2301
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC103028301
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38645331 ~ 38662640 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacttacacacactgccGTCCTCCTCCTCTACCTCTTTCAGCaagtttctccctctcttcgcAGGTGTAACGAAGATCCTGACCTTACATATTTCTTTCCTCAAACACACCCTTTcccactaaatactaaatacctAAACATGAACAAAGACTGAAGTATTGTGCTGTTCAGTATCTGCTTAGTAGATTCTAATCCAATCCAGGATGAACTTTGATGAGGTTCTGGCTCGGATCGGAGGCTTCGGCCGCTTCCAGAAGATTTTGTATGTGTGGATCTGCCTCCCTCAGATCTTCCTGGCCTTCCACATGCTGGTGTCGGTTTTTACTGGAGCTGTGCCACCTCACCTGTGCCGAGACacgaaaacacacactcacaacttCAACTTCACCCTCAGCCAGAGTGCCAGCGAGGCTTGCGGTAGTACACACACCAACAGCAGccttagcacacacaccaccacGGCCTGCAGAGACGGCTGGGAGTTCAGCAAGGACGTGTTCCTCAGCACCGTTGTCACTGAGtttgaTCTAGTGTGTGACAGTGCCACTCTGAACAACATCGGATCATCTATCTACATGTTTGGGCTGCTGGTTGGTGCTGTGGTGTTTGGTGTACTAGCTGACCGGTACGGTCGCAGGATCATTATTCTGGTGGGTCTGGCTTTGCAGGCTATGTTTGGTGTCGGTGCTGCGTTTGCTCCCAACTTCTTCATCTATGTGTTACTGCGGTTTGTGGTGGGAACCACTGTATCAGGAATCATCATGAACGCATTTGTACTagGTACTGAATGGACAGGTCCTAAACACCGGATGTTGGCAGGAATTATAACAGACTATTTCTTCGGCGTGGGCTACATCCTGCTGGCTGGAGTGGCGTATCTTATACGGGACTGGCGTAAACTCCAGCTTGCCATATCTGCCCCTGgtttcatcttcatcttctacATCTGGGTGCTCCCAAAGTCAGCTCGCTGGCTGATGGCGAATGGGAAGCAGGAGGAGGCGATGGATCTGATCTGTAAAGCTGCACTCATCAATAAAAAGCCTCTGAAAGGCAACGACATGGAGTTTCAGCTGAACAACTGTAAAGTTGAGCAAAAACTACAGAGGAAACACACAGTGGTGGATCTGGTGCGGACGCCACAGATGAGGAAACAGTCACTAATCCTCTTCTATCTCTGgtttgTAAACGTGCTGGTCTACTACGGTCTGTCTCTAAATGTTTCTGACTTTGGAATGAACATCTACTTAACCCAGCTGATCTTTGGGCTGGTGGAGATGCCAGCACGTACCATCACACTCTTTACCCTAAACCGCTCTCGCAGGATCTCTCAGCTTTCTTTCCTTGCTGTGGGGGGGCTTGCTTGCCTCCTCACCATCTTCATCCCCCAAAATCTACCAGTGGTCCGAACCATCCTGGCCATGTTGGGAAAGTTTGGTATTACAGCCTCGCTGTCCATTGTCTACGTTTATTCAGCAGAGGTGTTTCCCACTGTCGTCAGgcAGAACGGCATCGGCATGGGCTCTATGTGTGCTCGTGCAGGTGGGGTGATTGCACCCATAATCTACCTCCTCAGACGCATCAGTCCGCACGCTCCTATGGTGGTGTTTGGCCTGTGTCCACTAGTGGGTGCTCTACTGACCATTCTACTGCCTGAGACGGCCCACAAACCCCTGCCAGACACCATTGAGGATGTGGAAGGCACCAGTAACAAGGCAGAAACACAGATCTCGGATGGCATCATCTAACCGAGATTAGAACCAGTGGGGTGTTTGTTCTGAAGGACAATTGAGAAGGACATTTTTTTAACCTCAACAACCACATGCACACACTTAGGCcagaaatgtatgtatgtgaaaGCAATACATAACACAACGCAAGCTACATGCTGAGTATTTCCAAAAGAGGCACCACATCTACAGTCAAGGGCTTTAAAGTTTCAGGACATGCATGAAGGAGTCCTTATTGAATGGGGCTGAACAGAGCAAAATGGCTTAAACGGTAATAAAATGTGATATAGTTCTAGTCTCTTCTAGTCTTTCTTTTTGGAAAGAAGAATAATGTATTACCGAAAATTACCCCTGAATACCAGGACATTTCTATATCAAACAGCTAATGTAACTGCTACTGAATGCTAGATAGCATTATGACTACTGAGTATTGGTGAGCTGAGCTGCTCATTTGCTGAGCTGCTCCAACTCTGGTTGGACTTTGggtttattaaaacatgattaaaaagttcTTAACACTTtcttgcagctttctgagatccagtattttgtgcactttgcc

Function

GO: NA

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33037 lncRNA upstream 16355 38628768 ~ 38628976 (+) True G24546
TU33034 lncRNA upstream 24851 38620242 ~ 38620480 (+) True G24543
TU33033 lncRNA upstream 27465 38617486 ~ 38617866 (+) True G24542
TU33032 lncRNA upstream 27898 38617102 ~ 38617433 (+) True G24541
TU33022 lncRNA upstream 52804 38590941 ~ 38592527 (+) False G24535
TU33051 lncRNA downstream 142700 38805340 ~ 38809014 (+) False G24559
TU33055 lncRNA downstream 142700 38805340 ~ 38809014 (+) True G24559
TU33064 lncRNA downstream 154594 38817234 ~ 38821337 (+) True G24564
TU33076 lncRNA downstream 206094 38868734 ~ 38877657 (+) True G24575
TU33080 lncRNA downstream 220648 38883288 ~ 38884012 (+) True G24579
XM_007259905.3 mRNA upstream 38691 38579963 ~ 38606640 (+) True tube1
XM_022678233.1 mRNA upstream 68172 38526578 ~ 38577159 (+) True lama4
XM_007259908.3 mRNA upstream 207267 38428649 ~ 38438064 (+) True hdac2
XM_007259909.3 mRNA upstream 217413 38416750 ~ 38427918 (+) True hs3st5
XM_022667444.1 mRNA upstream 245010 38381590 ~ 38400321 (+) True LOC103029663
XM_007259901.2 mRNA downstream 4869 38667509 ~ 38717435 (+) True fyn
XM_007259902.2 mRNA downstream 4869 38667509 ~ 38717435 (+) False fyn
XM_022667246.1 mRNA downstream 4869 38667509 ~ 38717435 (+) False fyn
XM_022667313.1 mRNA downstream 59037 38721677 ~ 38726048 (+) True LOC111191700
XM_007259899.3 mRNA downstream 66672 38729312 ~ 38742584 (+) True traf3ip2
TU33020 other upstream 59053 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 263021 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 408290 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 547007 38092974 ~ 38098324 (+) True G24390
TU32737 other upstream 711342 37928355 ~ 37933989 (+) True G24345
XR_002649597.1 other downstream 4869 38667509 ~ 38717435 (+) False fyn
TU33100 other downstream 263056 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 276717 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 276717 38939357 ~ 38947222 (+) True G24583
TU33254 other downstream 382530 39045170 ~ 39045781 (+) True G24719

Expression Profile