RNA id: XM_022680095.1


Basic Information

Item Value
RNA id XM_022680095.1
length 2511
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC103046631
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8981004 ~ 9005830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCAATTTCTTTTCCCCTTGCAGACCAGTCAACTTTGGCCTATATTAAAGTGTTATCTGCTGCGCTGTTGTTATTagagggacttttattttgtcttaaacATCAGCAGCACATTGGCAGCCCAACTTCAACTTTGCTGCAGTACAAAACAAACACTTCGACTTATACAGGCTGCAGTCCATGGCGCTCCGGGCTTTCAGGTCTGTGGTCAATGGAAACTCCGTGTTCAGATTAAGGAGCGTCTTGGCTCGATATGAGGAGCTGAGTTTAATCACCGCTGGAAGACTGTGTTACAGCTCTGCTGCTTCTGACCATCCAACACAGACAGCAGGTCAGACAGTGGTCACAGAGAGGAAAGGTGTGGTGGTCACTGTGGGGATTAACCGGTCAGAGGTGCGTAATGCGGTGAACCAGGAGACCGCACAGAGGTTAACCAAGGAGCTTTCAGCCTTCGACCAGGACGACACCCTCAGTGTGGCTGTGCTGCATGGAATAGGAGGAAACTTCTGTGCGGGATATGATCTGAAGGAGCTTTCGCAGGATGCTGCTTCTGTCAAGTTGGGGCAAGATGTTTCTCAAGGTCCTGGTCCAATGGGTCCCTCTCGAATGAGACTGTCCAAGCCACTGATTGCAGCAGTGAGTGGTTTTGCAGTGGCCGGTGGTTTTGAGCTGGCTCTGTTGGCAGATATCAGAGTGGTGGAAGAGAGTGCAATTATGGGAGTTTTCTGCCGCAGATTTGGTGTGCCGCTGATTGATGGAGGTACAGTGCGTCTACCGGCGCTGATCAGTCTTTCCCGTGCTCTGGATCTTATTCTCACTGGAAGACCTGTAGGAGCTCAGGAAGCCCTGGCATACGGACTGGCAAACAGAGTTGTGCCAGATGGACAAGCTTTACAGGCAGCTGTTGAACTTGCTGAGCAGATCAGCTCCTTTCCTCAGCTCTGTCTCAGGGCTGACCGCAACTCCGCCTACCATTCTACTTTTGACTCCTCCTCCTTTACTGAGGCTATGCAGTTTGAGATGGATCATGGCCAGCCAATCATCTCAGCTGAATCTGTGAAAGGGGCAGGGAGGTTCGCTGCTGGCGCTGGTAGAGGTGGAAGGTTCTTTGAATCAGATCAGAAATAGTATGTTTCAAAAAACAGTCATagtaaataattgtaataatgtgtCCTTTTGAAGAAATCAGCAAAAATTCTGTCTGTAATGGTCTGTTTCCAGGATTTAGGATTTGTTTACGAGGTGAGCAGTTAAAGGAGTGTTTAAGTAGCAAAACCGaccaaaaacaaccaaaacTTGTGGCGTATTgcaaaagtaatattaataataataataataataataaaacacacaaaaataggCGTGATTGCTTAAGCTATACTATATCCTGAAAACCTGTAAATCAATGAATAAATCCATCAACAATCCTTTTAGAGTAAAGTCTTACATATAATTAAGCCATtctctttttcacacacacaggaaagcatttaaataattgtttttacttTCTATAGTTATTTAAACCATCCATATTAATTGTTCATATTAGTAGTCAAGCAATTGACTTAAAGAAAAACTACAAATTACAGAGGGTCAAAGAACTTTCAACTTGAGATGTACAGAAACTGGGAATCTTACAAGATTAAACTGAATGACTGccaaacacatacacaatattgttgtaataaaaactacaaaacttATCTTCAGTTGTTTACATCTTACTCCCCTCATTGAATATTAGTGCATCATGTCAATTATGTCTACTGTGTCAAATGTTGTAAAAATGATGGAAGTGTATTTGCTTGACTTCTCCTTCCAGATCTTTTTACTTTAagctgaaaaattaaaaataaatgttcatgTTCTACAGAGacccaaacattttttgttaaatggcaaaaaacatgaaaaaaaaactctctttctctctgttaccCTGAAAAGCATCTGTGACCACTCAGTTAAGTGGCCCAGTTATGGTTTTGAATTGTATGTGTTATACCTTTAAATTGGCATGTAATTAAAGATAATTGACTCTATACAGAATATGATATGGattactaatattatattatttatatcataGCCATCATAGATAAACCTCTTTGAAGAAGACTGCACATTGAATAGTTATAGATACAGCATTCAACATTTTGTATTattctaagaaatataagaatATGTTAGGACAAAGGTcttaagaaaatgagaaagagcaAATGTTATTTGTTcccttttttattgttaaaatgcTCTAGGCCACACTACTTTATACCACCACACATTTATAGGCCTGCACTTGGTGTCCAGTCAGAACATGAAgaaatttttgggtttttttttttttagatcttttatGAAGTAGATTATTTGGGgcctttttaattttcttaataaGCTACATTCTCACTAAGAACATGCAGATATAAATGAGTAGAACACCACAAAAATGCAACCATTCTCAGACACAATTTATTTACATCTTATAAAGGAATTCCTGACAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01692 paaF, echA; enoyl-CoA hydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651316.1 lncRNA upstream 49246 8928692 ~ 8931760 (+) True LOC111194870
TU23560 lncRNA upstream 77064 8899940 ~ 8903942 (+) False LOC111191978
TU23552 lncRNA upstream 82717 8895965 ~ 8898289 (+) False LOC111191971
TU23526 lncRNA upstream 103880 8873996 ~ 8877126 (+) False G17442
TU23525 lncRNA upstream 106563 8872932 ~ 8874443 (+) True G17442
TU23578 lncRNA downstream 67664 9073494 ~ 9074499 (+) True LOC111194882
XR_002651329.1 lncRNA downstream 67738 9073568 ~ 9074488 (+) False LOC111194882
TU23581 lncRNA downstream 76258 9082088 ~ 9084442 (+) True G17474
TU23608 lncRNA downstream 197559 9203389 ~ 9215506 (+) True G17496
TU23799 lncRNA downstream 476572 9482402 ~ 9482708 (+) True G17632
XM_022680054.1 mRNA upstream 6968 8932684 ~ 8974038 (+) True LOC103021367
XM_022668284.1 mRNA upstream 59275 8904081 ~ 8921731 (+) True LOC111191981
XM_022668275.1 mRNA upstream 77002 8902645 ~ 8904004 (+) True LOC111191978
XM_022668265.1 mRNA upstream 78752 8900225 ~ 8902254 (+) True LOC111191975
XM_022668253.1 mRNA upstream 81361 8891244 ~ 8899645 (+) True LOC111191971
XM_022680109.1 mRNA downstream 3416 9009246 ~ 9068931 (+) True bmp6
XM_007260060.3 mRNA downstream 113574 9119404 ~ 9132136 (+) False tfap2a
XM_007260059.3 mRNA downstream 115510 9121340 ~ 9132136 (+) False tfap2a
XM_007260061.3 mRNA downstream 117123 9122953 ~ 9132136 (+) True tfap2a
XM_007260058.3 mRNA downstream 117841 9123671 ~ 9132136 (+) False tfap2a
TU23538 other upstream 30847 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 59350 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 59350 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 264219 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 2313113 6667821 ~ 6667893 (+) True trnat-ugu_6
TU23933 other downstream 1275394 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 2172078 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 2849776 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 3285440 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 3961733 12967563 ~ 12975106 (+) True G18332

Expression Profile