RNA id: XM_022680081.1


Basic Information

Item Value
RNA id XM_022680081.1
length 2175
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC103047134
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8975458 ~ 8979618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGCGCTAGTAGGAAGAAGAAGGCAGAATCCATCGCGTTCCGCTTCTTCGCGGGCATGCGAATATACACCAGCAAACACGGATAATAAAAGGTACAGCGGCGTTTTATTGTTGTGGACTTTAACGCGAATTAACCTCCAGTAtccagaggaagaggaagagctgctgctgctgctgctgctgaaaccACTGCTTTTAAACTGCTGTTAAAATGTCTTTCGGGGGAGCAGTGTGGCTGGCTGTGCAGGAGGACCTGTACAGAGGGTTTAGTAGCGGATATGACCATAAAAATTCCTCCAGCAGCAGATCCAACATCTCCAGCAGctccaacagcagcagcactgagGAGTCCAGAGGTATCCTGGGCCGCATGGATGACTACTTTCTTTCCCAGTGTTTCCATTCATCTCGAGCCTGCCTGGCCTTTCTGATCGACTACGTTACATCTCGTCTACAGAAGGATGTGTTCAGACCAGTCAGCGACTCTGCCTCAGTAGAAGCCATGATTTTAGCCACGCTGCACTTCTGTTCACATGGGTTTCTACCCAAGAAAATCACAGACCTGCTGGGGCTGGACCAGCTAGCTGCAGCTGAGGGGGTAAACCTCATATCTAAAGTCCTGGCGGACATGTCCCACAGCTTCATCACCTTCCCAGGCAGCTATGATGACCGTATGGGTGTAGCTCAGGGATTTAAAAACATCAGTGGCATCCCAAACGTGGTGGGAGTCCTGGGCTGTTTACATGTAAGAGTGACACctcctcctactactactactactacagaaAGCCTCTACCTCAACCCTCTGGGTTACAATTCAGTGATGATGCAGATCATCAGTGATGTGGATGGAAATCTGCTcagtgttgagcagtgttgtCCTGGGGGCACTCTGGAAAAGACTGTTTGGGAAAAGTCCAACATTTACCAGGAGTTCATCAATTTCCAGCATGGCCAGACATGGCTTGTTGGTGGCAAAGGGCTGCCTCAAAGTAGGCACATGTTGACTCCTGTGCAGCGCACTCAAAGCAAGACCAGTGCAGCCGAACGTTTCAATGCTGCTCATTCTGCGCTCCTGAGCTCCAATCAGCACGTTATTGGTTGTCTGAAAACCCGTTTCCAGTGCCTGCACGGACTTGGAGCTGTGCAGGCCAACAAGCTTGAGACATTCAGCCGTATTATCACAGCTTGTTGCGTGCTTCACAACATCTATAAGAAATTCTCTGTGCCACTACCCAGAGAGCCGGTGTTGGAGCCTCTACCCCCAGTTCAAGTGAGGAAAGAAGGGGAGGAGAAATCCTTTTGCTACATGGGAGAGACACAAGAAGACATGATAGAAATGTGTTTTGGTAATGATGGAGATTAGCAGGTGCAGGACCAGAAAAAGGACATCGAGGAGAGGAGCAAACAAACTTGGGTCTGTTAAAAGGATTTTGCCAAATGTGTTACAGATGGAGGACGGGTGTGTATTTTGGGTctgttttgctaaaaaaaaaaaaaaaaaatactttggaCAAAGTGGACATGACGTAGTAAAAAATCATCTCCATCTCACCCAAACGAGGTGATATAAGAAGAACAGATGCTGCTTTTATAGCGCTCCATGCTCCTCACAGTAGTACAGAAGTAGCTCACACAGTTGCCTTATTTCTATTAGGTCACAATTAAACTGATTTATTGTTTCTATAGGTCTGCTCAAATTGTGATTCTGATTTCACTATGTGAACCATAATAGTGTGAAATGCAGTTTTACACATATAtaggaatatttttatttaagtcaATGCAGTTGCAGTAACCATTATAGAGACAGCAGTTGTGTGTTACAAAAACGGAGCATGTGAACACCCATTGCAGTATGCATCCATTCTGCCATTCACAATATAAACCTTTCATCAGGTATGGCTATACTTActgtttatgttaaaaaataaaagtattatgCATCTGTAATGTTAGcagaaatatatcatataaaatatgtttaagagTATAAACCAATCTTTACATTGCTAcctcttttgccttttttttaagtacaataaCACAGTGGCATTGTTGCTGTATTTGTTGTCAGAAACTTTTGATAGAAGTTTGTGAGCAGTAATGGTTACATTTGATATGGATGAATTCATTTTTGTAGATAAAGGTAGTATAAATGAGCCTTGAAGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23708 lncRNA downstream 14618 8947833 ~ 8960840 (-) False G17558
TU23712 lncRNA downstream 14618 8957043 ~ 8960840 (-) False G17558
TU23705 lncRNA downstream 14618 8958680 ~ 8960840 (-) True G17558
TU23709 lncRNA downstream 61255 8911970 ~ 8914203 (-) False G17558
TU23679 lncRNA downstream 89141 8871219 ~ 8886317 (-) False LOC111188216
TU23747 lncRNA upstream 4743 8984361 ~ 8985654 (-) True G17585
TU23752 lncRNA upstream 18482 8998100 ~ 9442767 (-) True G17589
TU23767 lncRNA upstream 88417 9068035 ~ 9157978 (-) True G17600
TU23766 lncRNA upstream 124946 9104564 ~ 9108428 (-) True G17599
TU23807 lncRNA upstream 583433 9563051 ~ 9563268 (-) True G17640
XM_022680048.1 mRNA downstream 98333 8873882 ~ 8877125 (-) True LOC103030846
XM_022668236.1 mRNA downstream 102031 8871207 ~ 8873427 (-) True LOC111188216
XM_007239767.3 mRNA downstream 143537 8813024 ~ 8831921 (-) True LOC103029888
XM_007239763.2 mRNA downstream 199211 8746885 ~ 8776247 (-) False LOC103028623
XM_022680116.1 mRNA upstream 91764 9071382 ~ 9084286 (-) True txndc5
XM_022680125.1 mRNA upstream 129396 9109014 ~ 9113905 (-) True bloc1s5
XM_022680199.1 mRNA upstream 1015527 9995145 ~ 10009151 (-) True mak
XM_022680201.1 mRNA upstream 1015527 9995145 ~ 10009151 (-) False mak
XM_022680205.1 mRNA upstream 1015527 9995145 ~ 10009148 (-) False mak
TU23350 other downstream 968219 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 1986647 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 1987199 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 1987751 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 1988303 6987083 ~ 6987155 (-) True trnat-ugu_77
TU23805 other upstream 582809 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 1267057 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 2036411 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 2036411 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 2096620 11076238 ~ 11083799 (-) True LOC107197924

Expression Profile