RNA id: XM_022680180.1


Basic Information

Item Value
RNA id XM_022680180.1
length 1753
RNA type mRNA
GC content 0.47
exon number 10
gene id slc35b3
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9820961 ~ 9836628 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCTCCTGAATCTACAGTGCTGTGCTTTGGAGTAGCTGGGTTAATTAACTAGCTACAAGCATCAGGAGCCCACATACACGATGAGTTCCAAATTCGGCTTGATCAACTACAACTCCCGAAAAcacatctccatctccatcccCTCTTCTACAGAGGTGATGTCCCCGCATATCAAATCCGTAGAGGAGCTCAAAGTGCTGGGGATCAACCTGAGCAGTTTCAACACTCCAACACAGTTCTTCATTTGTGTGGCTGGAGTTTTTGTCTTTTACCTCATCTATGGGTACTTGCAGGAGCTGATCTTTTCAGTAGAAGGATTTAAGCCTTTTGGCTGGTACCTCACCCTCGTTCAGTTTGGGTTCTACTCTGTGTTTGGCCTGGTAGAGCTGCAGCTTACCCAGGACAAGCGGAGGAGgaTCCCAGGAAAAACATATATGATCATAGCATTTCTAACGGTTGGGACCATGGGCCTTTCCAACACATCACTGGGATACTTGAACTATCCGACGCAAGTCATCTTCAAGTGCTGCAAACTCATTCCAGTTATGATTGGAGGAGTTTTCATACAAGGGAAACGGTACAACATTGCAGATGTGTCTGCTGCTCTGTGCATGAGCCTGGGCCTCATCTGGTTCACTCTGGCCGACAGCAAGGTTGCACCAAACTTCAATGTGACAGGGGTTATCCTTATTTCTCTGGCACTTTGTGCCGATGCTGCTATTGGGAACGTGCAGGAAAAAGCCATGAAATTGCACAATGGATCCAACTCAGAAATGGTTTTATATTCCTACTCTATTGGGTTTGTGTATATTCTCCTGGGACTTCTGTGTATTGGTGGATTGGGTCCTGCTGTGGCCTTCTGTGCTCAGCATCCAGTGACTACATACGGCTACGCgttcttcttttctctcaccGGCTACTTTGGCATCTCTTTTGTTCTGGCCTTGATAAAGCTCTTTGGAGCGCTGGTAGCAGTCACAGTTACAACAGGAAGAAAGGCCATGACGATCGTCTTGTCGTTTTTATTCTTCACAAAACCTTTCACATTTCAGTACATATGGGGAGGCCTGCTGGTAGTCTTTGGGATCTTCCTCAATGTCTACAGCAAAAACAGGGACAAAATGAAGCTTCCCTCGTTTGCAGAGCTCCGGAATCGAGTTCTCAGTGCCAAGAAGGGCCGAGCGCTCTCTCAGACTGTTTAAACAGACCTGACGGATCTCCACCTGAGTGGACTGGCCACGTCATAATGAGCTGGACCTGACGACTTGCTGTCACGTCCTGAAACATCAGGAGCTTTCGAGGACAGAGCAATGGACGACATGGatgctgctgttgttttgttttttgtttttttagccaAATTGCAAAGTTTTGCACTGGCCTAAGCCTACCTGGGCTTTGGTGGAGAACTCATATGGTGAAAGGAGCTCCAACAGTCTCATCATGTCCAGAAGAAGGGGTTGCCGATTGAAGGGAATCACTGTTGTAACGGATTCTAACGTTgtaactctctctttcacctGCATGTGCCGGCAGAATGATGGCATCCTCTGAGACGGAAAGAAGTCAGTCATTTCCAAACgcgtttgttttatttaactgtGATTAGACAGGGAACATGGGAAGCTACACGTCGGCAGTTTTGAAAGGTCGACGTTTGGGAGTGTATCAGTGTGTCGGCTGCCATATTCGCTATCCATTTGTTTGGTGAAAGGGTAgctctttttacattaaaaacaaactgGGAAGTTTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23810 lncRNA upstream 234669 9586658 ~ 9586872 (+) True G17643
TU23804 lncRNA upstream 258816 9562428 ~ 9562725 (+) True G17637
TU23799 lncRNA upstream 338833 9482402 ~ 9482708 (+) True G17632
TU23608 lncRNA upstream 606035 9203389 ~ 9215506 (+) True G17496
TU23581 lncRNA upstream 737099 9082088 ~ 9084442 (+) True G17474
TU23850 lncRNA downstream 9386 9846014 ~ 9846301 (+) True G17679
TU23856 lncRNA downstream 51238 9887866 ~ 9888378 (+) True G17685
TU23881 lncRNA downstream 171162 10007790 ~ 10008795 (+) True G17709
TU23922 lncRNA downstream 409956 10246584 ~ 10247321 (+) True G17735
TU23926 lncRNA downstream 422390 10259018 ~ 10259526 (+) True G17739
XM_022680169.1 mRNA upstream 339450 9311790 ~ 9482091 (+) True LOC103030214
XM_022680172.1 mRNA upstream 339450 9311790 ~ 9482091 (+) False LOC103030214
XM_007260059.3 mRNA upstream 689405 9121340 ~ 9132136 (+) False tfap2a
XM_007260063.3 mRNA downstream 101133 9937761 ~ 9954129 (+) True eef1e1
XM_022680191.1 mRNA downstream 143978 9980606 ~ 9989518 (+) True LOC103024812
XM_007260070.3 mRNA downstream 154778 9991406 ~ 9995040 (+) True tmem14c
XM_022668293.1 mRNA downstream 243963 10080591 ~ 10101407 (+) True sycp2l
XM_022668303.1 mRNA downstream 307456 10144084 ~ 10227332 (+) True LOC103027767
TU23538 other upstream 871382 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 899885 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 899885 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 1104754 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 3153648 6667821 ~ 6667893 (+) True trnat-ugu_6
TU23933 other downstream 444596 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 1341280 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 2018978 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 2454642 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 3130935 12967563 ~ 12975106 (+) True G18332

Expression Profile