RNA id: XM_007260063.3


Basic Information

Item Value
RNA id XM_007260063.3
length 2186
RNA type mRNA
GC content 0.45
exon number 4
gene id eef1e1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9937761 ~ 9954129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGCTGATCCGGCTTTCCTGTTTCGGCAAACATGGCGCTGAGAGAGCTGTCCTCGCTGGAGAAGTGCCTGGGCCTGAAAAAGCCGAATAAATACAGCACGCAGGGAGAGCGGAAGgTCCCTGTTCTGCAAAACAACAATGGCCCAGCAGTGGTTGGTCTGGTGACCATAGCCTCCAGCCTGGTCCGAGATGCCAAGAAGACAGAGCTGCTGGGGAACACTGCTGAGCAGAGAGCGGTGGTTCAACAGTGGCTGGAGTACAGAGTAACCCGTCTGGATAGCTGCACTAAAGATGAGGTCAAGGTCATACTTAAGGAACTTAACCATTACCTGGAGGATAAGGTGTATCTGGCTGGGAACAGCTTTACTCTGGCAGATGTTCTGATGTACTATGGCATCCATTACATCATTATGGAGCTGGCGGTTCAGGAGAAGGAGAAGTATTTAAACGTGACCCGGTGGTTTGACCACATCCAGCACTACCCGGGAGTGCGTCACCACCTGCCCCCTGTGGTAGTTCTCAGGAACAGAGTGTACCCCAGCGGCCAGCACTGACCCCCCGCCCACCTCTGATACCAGGCAGCGTGGTAATTGTGGCCGGGCCTTGGGGCCTCCATCCTTACCCCTTATCCTTCACTGCACTGCCCTCCCTGCAAGATAGGCTTTCTGGAGCGCAACACTGGGGGCATTTCAGATGTTTGGGGCAAGACAAACGGACTGCCTGAATTGTTAGTTTTCTGTGTCTTTATGTAttgagagttttgttttttgtttattttattttttttcccttaagtTTTAACCTTGTGTGTCACATTGTGGTGAGTGTATTTATAAGGGATGGAATACAACAGTATAGTTACATACAAAGGGAAAAAATGGGCAggtactgattattaataaattaactttattaacaattaattaaGCAGGAAGGTAAAGATGAAGGAGAAGGCAGAAGAAAGCACTAATATAACAGTCAGCTAGGTGTCTACAGAGGAACAAGGACTTGACgagacaaaatattttttttaaaataaaatctggatAAGTGGCTTCTAACGACAGAATACAACACTATTTATTAGTGGTCTGGGTGTagaaacaacacaaaatgagTCACTGCCTGACACCAATCCTTACAACTAAAATCAATACTGCTTTTTGAGaatttatacagtattgcaaatgtaaatattgcaatactatacaatattaataaaattaatgtactgtaattgAAGCAGGCTTAGACATACCAAGACCTTTAAATACAGCAAAATTCGTCCATTTCATTCTGTCTGAGtctactttagttttttttttttttctttcccactCCTTCCTCTCACGCTCGTTCCCCTCTCAGCAGCAGTACCAGTAGTTGTGTGGGCAGCGTGGAGTGGTTAGCCCGGCTTGGCATGTTTGTGCTGTGGGGCAGAGGGCAGGCTACCAGCTGCAGCGGGCAAGGCAGCCTCCACAACTAGCCAGCTGCCGGCAGCGACAACCACGCACTGTACGTCATTTCACCCACAGTCCCCCGCTCTGCTGCCCTGGGCTGGAAAATCCTATTGTGACACAACACtccagcagttttttttttttcttctttccagCTCAATCCTACTGGGTACTGGCGGAAGCATTCGCATTTTCTATAGCGTGAATATATAAAGATCTCACATATACAGTTCCAGTTAATTCCTGAGTTCTCAGTTCAAGACAAGGTGCTTTCTTTGAGCTTGTTGTTACATAGGATATTGTATGTGTAGTTATTAATattgaaaaagaagagaagatgaAATTTCAGGGGCGCGCAGCTCTCATACAAAGGGAGATTTATTGTTTGAGCTCGCGTGTATTTGAAAAATGTCGTCTTGATCAGATTTGAGCCAGTTTCTTCAATGCGCACCATGTGGCCAGGCTGCTTTGGAGCCATCCTGTCCGCAGTCTTTGCGCTGGAAAATCCTCTGGTAATGAAAGTTGGGAAAGCAGTCCCGTTGCTCGTTCACCTATCTGCTGTGCATATGCTGACAAACATCCCTCTgttctttttattgtatttccTCTCACGTAAGCCTCCTTTATGAAACGCTGCTGCTCCCAAGCCCAAGTTTGTTATTTAATGTCAACAGAAACTTGTCTTGTGCCAATAAACggaagaaaaaagggaaatcaCAGAACTTT

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15439 EEF1E1, AIMP3; eukaryotic translation elongation factor 1 epsilon-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23856 lncRNA upstream 49383 9887866 ~ 9888378 (+) True G17685
TU23850 lncRNA upstream 91460 9846014 ~ 9846301 (+) True G17679
TU23810 lncRNA upstream 350889 9586658 ~ 9586872 (+) True G17643
TU23804 lncRNA upstream 375036 9562428 ~ 9562725 (+) True G17637
TU23799 lncRNA upstream 455053 9482402 ~ 9482708 (+) True G17632
TU23881 lncRNA downstream 53661 10007790 ~ 10008795 (+) True G17709
TU23922 lncRNA downstream 292455 10246584 ~ 10247321 (+) True G17735
TU23926 lncRNA downstream 304889 10259018 ~ 10259526 (+) True G17739
TU23929 lncRNA downstream 315392 10269521 ~ 10270290 (+) True G17742
TU23942 lncRNA downstream 355936 10310065 ~ 10330395 (+) True G17751
XM_007260062.3 mRNA upstream 101133 9820961 ~ 9836628 (+) True slc35b3
XM_022680180.1 mRNA upstream 101133 9821541 ~ 9836628 (+) False slc35b3
XM_022680169.1 mRNA upstream 455670 9311790 ~ 9482091 (+) True LOC103030214
XM_022680172.1 mRNA upstream 455670 9311790 ~ 9482091 (+) False LOC103030214
XM_007260059.3 mRNA upstream 805625 9121340 ~ 9132136 (+) False tfap2a
XM_022680191.1 mRNA downstream 26477 9980606 ~ 9989518 (+) True LOC103024812
XM_007260070.3 mRNA downstream 37277 9991406 ~ 9995040 (+) True tmem14c
XM_022668293.1 mRNA downstream 126462 10080591 ~ 10101407 (+) True sycp2l
XM_022668303.1 mRNA downstream 189955 10144084 ~ 10227332 (+) True LOC103027767
XM_007260078.3 mRNA downstream 386365 10340494 ~ 10350048 (+) True LOC103028717
TU23538 other upstream 987602 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 1016105 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 1016105 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 1220974 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 3269868 6667821 ~ 6667893 (+) True trnat-ugu_6
TU23933 other downstream 327095 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 1223779 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 1901477 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 2337141 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 3013434 12967563 ~ 12975106 (+) True G18332

Expression Profile