RNA id: XM_007260076.3



Basic Information


Item Value
RNA id XM_007260076.3
length 1091
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC103028097
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10267658 ~ 10278333 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ATGAATCCAGGTAAATGGAAACTTATTTGTGCTGGGGAATCCTCGGCCGGGCGTGGGCGGTAGAAACTCCCCTGTTGGGTAACATGTCTAAACCTGTTCCTCCTGGCTTATATAAAGCCAGACTGTGGCTGATTCAGACCACAAGACCTCTCTAGACCGGATCTCTGTACCTCCAGACCCCAAAAACCGCAACGGCTGCTTTCAGTAGAGCTGCTATCACAGCTGAGCGGAGACGAGCAGAGGAGAGCAGAGCATCATGGACAGGCTTCATTCAGACAGGTGTGACAGTGTGGAGCTTGATCCTAATCTAAGGTTTTGTCTCAGTCCTCCTGGCCAAAGCCCACCATACACACCTAATTTAGAGGTGCTTCAAAACCTGGAGAAGAAGAATCAAGAGCTTCTCGACATCAATAAGAAATGGGCTGAACGATACAGAACACTGAGACAGCATGTCAAAAGCTACGAGCTGAGgaaagaagagaaggagaaagacaCTAAACAGACTGGACAGGAAGCTGAGCTGAGGGCCCGCCTTCAGGatgcagacagagagatagcATGGCTGAGGATGCACTGTGACACTCTGACCAGAGGAGGGCAACAGCTAAATGAAGAAATCATGAGACTGAATACGgTCCTGCAGAAGAGCCTGGCAGTTCAACACAAGAGAAACCAGAGAGAGGAAAATGTTTGGAAACATCAGGCTCAGGTGTATAAGGAGGACTTCTTTAAAGAGAGGAAGGATAGAGAAATGCTAATGGCCAAATACACAGACTTGGAGGAAAAGTTCAAGAAAGTCCATGATGAGTTACGTGCTTACAAATTACAAGCTCGGTGGGCTCAGTTAGGCCCCTCGACAAGCCCCCCAGCACACACATAACCCATGTGATGCATCAGCGGAGTCCCATTCAGCTACAGCATAAAAAACGACTCAAAGCTGACCTTATTAAGAGCTTACCCTAAGCTGTGCTGCTCCCTTTATATATACCTTTATTTGTCTGACTGTGTGATGCTTATTGTTAGTGTATTAAGCGTGTTCTATTATTTAAATGGAATAATTTATCTGTAAATAAAGTTAGTTATATACAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23999 lncRNA downstream 7371 10259935 ~ 10260287 (-) True G17791
TU23989 lncRNA downstream 133920 10133289 ~ 10133738 (-) True G17782
TU23987 lncRNA downstream 169933 10093193 ~ 10097725 (-) True G17780
TU23974 lncRNA downstream 236677 10017813 ~ 10030981 (-) False G17770
TU23975 lncRNA downstream 236677 10029716 ~ 10030981 (-) True G17770
TU24010 lncRNA upstream 15253 10293586 ~ 10298657 (-) True G17799
TU24030 lncRNA upstream 64463 10342796 ~ 10343263 (-) True G17808
TU24080 lncRNA upstream 262145 10540478 ~ 10542381 (-) True G17845
TU24078 lncRNA upstream 264172 10542505 ~ 10543607 (-) False G17845
TU24103 lncRNA upstream 576293 10854626 ~ 10855071 (-) True G17859
XM_022680257.1 mRNA downstream 9785 10231513 ~ 10257873 (-) True mppe1
XM_007260074.3 mRNA downstream 149050 10103179 ~ 10118608 (-) True elovl2
XM_007260072.3 mRNA downstream 189076 10071078 ~ 10078582 (-) True gcm2
XM_022680213.1 mRNA downstream 258514 9995145 ~ 10009144 (-) False mak
XM_022680282.1 mRNA upstream 50757 10329090 ~ 10340189 (-) False LOC103029242
XM_015608547.2 mRNA upstream 50757 10329090 ~ 10336901 (-) True LOC103029242
XM_022680293.1 mRNA upstream 606520 10884853 ~ 10952099 (-) True LOC103044364
XM_022680295.1 mRNA upstream 608771 10887104 ~ 10952098 (-) False LOC103044364
XM_022680318.1 mRNA upstream 754843 11033176 ~ 11080184 (-) False LOC103047439
TU24000 other downstream 20340 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 704933 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 2260419 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 3278847 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 3279399 6988187 ~ 6988259 (-) True trnat-ugu_79
TU24180 other upstream 737696 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 737696 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 797905 11076238 ~ 11083799 (-) True LOC107197924
TU24378 other upstream 1406654 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 2011350 12289683 ~ 12289755 (-) True trnam-cau

Expression Profile