RNA id: XM_007260664.3


Basic Information

Item Value
RNA id XM_007260664.3
length 4365
RNA type mRNA
GC content 0.47
exon number 12
gene id pcsk9
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72498722 ~ 72518295 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCTCAGGGAGACAGCAGATCAGAGTGTTCAATCAACCGCTCCTCCAGCACTCACCCCCAACATGCTCTAGACTccacaaactctctctcacacacacactcactcacacactgcttaCTGACTGTGCTGACTAACCGGGGCTGTGCAGGAATGAGGGGTCTGGCTGCTCTcgcgctgctgctgcagctgtgtgctgctgctgctgctctggctGATCCTGAGGAAGACTACACTGAAGATGTGGAGCTGATCCTGTCCCTCATCCGCAAAGACGACTCCCAGGCCGAGCTCGAGTCTGCGCCCTCCGCTCAGTTCCTCAGGTGCACCAAGGCCGAGTGGCGCGTGCCCGGTAACTATATCGTGGTGCTGCGGAACGGGACGCACGAGAATCAGGTGGAGCGCACGATGCGCGCGCTGAGAGCCAGAGCGGCGAGGCGGGGCTACCTGACGGAGATCACGCGCACCTACTCCGGAGCAGTGCGCGGGTTCCTGGTGAAGATGAGCAGCGACGTCCTGCACATGgcgcTGAAGCTGCCTCATGTGGATTATATTGAAGAGGACTCGACAGTGTTTGCGCAGGGTCTGCCCTGGAACCTGGAGCGCATCGTCCAAACCGAGCACGAGAGCGGAAAATACACACCACCCAATGATGGAGCTCAGGTGGGGCTGTACCTCATGGACACCAGTGTTCAGACGAGCCATCGTGAGATCGAGAGCAGAGTGATGGTGACGGATTTCAACAGCGTGCCGGAGGAGGACGGGGTCAGGGTTCACAGGCAGGCCAATCAGTGTGACAGTCACggcacacacacagcaggggTGGTGAGTGGGCGAGACTCAGGCGTGGCGCGTGGCGTCAGTGTGAACAGTGTGCGGGTCCTCAACTGCCAGGGCAAAGGCACTGTGTCTGGAGTGATGGCAGGTCTGGAGTACATCCGTGCATCTCTGCAGACACAGCCCATCAGCCCTCTGATTGTTCTGTTGCCGTTTGCTGGGGGCTTCAGTCGTACTCTCAACACTGCTTGTCGGGAGATGGTGCGGTCCGGCGCAGTTCTTATAGCCGCAGCTGGAAACTACCAGGATGATGCCTGTCTGTATTCACCAGCCTCAGAACCTGAGGTCATAACAGTGGGCGCCACCAATGCTGCTGACCAGCCACTCACTGCAGGGAACACAGGCACCAATGTAGGCCGCTGTGTGGATGTGTTTGCTCCTGGCGATGACATCATCAGTGCCTCCAGTGACTGCCCCACCTGCTTTACTACAAAGAGTGGCACTTCACAGGCAGCCGCACATGCAGCTGGTAtcgcagcagtgctgctgaatgCTAAGCCCAGCGCCAGCTCTGCTGAAGTGCTCCAGCTCCTCCGTCACCACTCAGTCCAGCAAGTGATGAACCCGGATTCTCTTCCTGCAGAACATCGCCTCACGACCCCCAACATGGTGGCTGCCCTACCAAAATCCACCTCTGCACTCTCAGATGATGCGCTGCTGTGTCGCTCGGTTTGGTCTGAGAAGTCAGGGGTCTCAAGCTTCGATACAGCAGTGGCTCACTGTCGCCAGGGTGAAGAGATGTTCAGCTGCTCCAGCTATTCATCAGGAAGCCGAGCTGGAGAGAGAATAGAGATGCAGGATGGGCAGAAGCTGTGTGTGGCCCATAATGGCGTCGGAGGGCAGGGAGTGTATGCCATAGCCCGCTGCTGCACAGGGAACAGTGTGCAGTGCCAGAGCAGTGCCAGTCCCCACACAGGCACAGATGCAGAATGCCCTACTCCAGAGCACCAGCTCACAGGCTGCAGCTCTCACGTTGAGTCCGGAGGCGTGATTGATCCCATGCGGCCTCTCCACAGCAGCCGAAAGGCGTGTCCTGCCAGAGTGGGCACAACATCGCATGCTTCCTGTTGCCACGCCCCCAGTCTGGAGTGCAGGTTGATTGAGCATCACCCGTCTAGCTTTAAGGAGCAGgTGGAGGTGTCGTGCGAGGACTCCTGGACCTTGACAGGATGTAACTCAGTCTCTCACGGTTCAGTCACTCATGGTGCGTTTGGCCGAGGCAACACCTGCGTGGTGAAGGCGTCTGACCAGGGTAAAGGAGCAGCTGCTATTGCCATCTGCTGCAGGTATCGCCCACTGCAGCACGAGTCCAGCAAACACAGCCATGAACAAAACAACCACTAAAGCTCTGCTTCATACCAACCTCTACCAACCAGCTGTCCACTCTGCAGCTCCTGTTCCTGCGCTCTGATTAGGACAGTTCCTAAGAGGAGATCTGTGTGTGATCTGGAGTGACTCTTATTGTCTATTGCACTGTATAGTCCTGCTTTCATTTTTCCTATTCAGGCTAATGCCTCCAAGGTGCTATAAACCACCAGTTAGCACTGTGCATAATGCATGTAGAGGTCATTGCACCtttgttttaaacagtgttgAGTTGTAATGTAGTCTCTAATAGACCTGCACATGAGGGTTCTGACACTGTGACGAATTGAAGTACTTTAACTTTTAAGACCATTTAGAGAGAGTCTTCTATCAACACTCCACAGTAAACATGACTCTTCATGACTGATGAATTGTGACATTACTGTACACACtcctaaatataaatgtgtcaaGTTGGTTCTTTGGAGTGATCCTACAGAACAGGGTTGCCCATTCTTAGCCCTGGAAAACTACACCCTTCTAGATTGAAGTAGAGCATCATTTCCAAAGAAGTTGGGACACTGTGTAGAGTGTAAatagatttaaataaaaagtgaatacAATGATGTGCAACTCTCATAGACCCATATATTATTCACAATATTTAacacatatcgtcgctgtcctatgaaaaacacttatctccatttttgtcgatttttagtttactacataatttgaacagaaaaactgtccattacactgtgccaaaatttcttgatgaacggaccaatagaaactcttcaaaatgacctgaaataaacactttttacattgacttccattaagaGTTTTAAGGTTAAATTACCTTTTTTCAATCTCCtgttaagttgctgttttttgagataagtgtttttcattggacagcgatgatataaaAGAatgatattttaacatttcacGAAAATCTGCTGCCATTTATAGAACTTGATGGCAGCATAACATCTCAAAACTGTTTctaaaaatgacaatttaacAAATTGTTCCTTCATAGACACTAAAGTGTTCCTGCTTTTTATGGAATTGGGGTTGTAGATGTCAATCACCAGCATTGGGCACCTCTACTATAGAAAGAACCACTGCAGAAACCCCCATATGGTCCACACTGTAGCTCTGTCCCCGTGTTGTAAACTAGGTTGTACCATATGCTGTTTCTGGAGGAAACTGCCCAGGATAAACTAAACTTttggtaagtttttttttttttttaagaaccatactcaaagtttttttagataaccccctacagatttttttttgtatttgctttttcttttgctttatcGTACTGATCATTTTCTGGTTATCAAACATTAATATCAGACAATGATAACCTGAGTATTTATAAacatcactttttaaataattattttatttattaaaggaaaaaaaaactatccaaacaaATCTAggcctgtgtgaaaaagtgtgtgCACCCTAAACCCAATAACCCTTGGCGGCAGGAACTGCAGTTTGGCTTTACCAATAACTTgagcaatgagtctttcacatctctgtggaggaatttttgGCTCACTCTTCTCTACAGAATTGTTTTACCTCGTCCACATTTGAGGGATtataagatcatgccacagcacgATAGGTCactcccaaaaaaaaatttgttttttttaaccactcagAGTTGGatatgtttgtgtgctttgggtcattgtcctgctgcaaaaccCAAGTACACCTCAGCTTCAGGTCATGAACTGgctggacattctccttcaggattttctggtaaacagcagaattattgcttccatctattacagcgaGTTCttcaggccctgaagcagcaaagctgCACCaaatcatcacactaccacaaCCATGTTTTAGATTCAGTatgaattttttttctgaaattaattgttaattttatgTGACATCCACCATCCCAATTTTGTcatgtcagtccaaagaatactTTTTGAGCAAATGGGAGATgggcctttgtgttctttttggtcagcagtgttttttgccttggactTCGTCCATTAATACAATTTGCAACCAGTCTCTTTTTTACTATTACTATAATCATTAATACTGACTTCATGTTGTCAAAatggttctatttaagtgattttttttattctacaggtctggtggtaatcaggcctggttgtggttagtagtaaaaattt

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K13050 PCSK9; proprotein convertase subtilisin/kexin type 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43763 lncRNA downstream 1671 72493608 ~ 72497051 (-) True G32616
TU43768 lncRNA downstream 15858 72479262 ~ 72482864 (-) True G32620
TU43752 lncRNA downstream 132985 72365530 ~ 72365737 (-) True G32606
TU43750 lncRNA downstream 135381 72362930 ~ 72363341 (-) True G32604
TU43703 lncRNA downstream 175743 72322664 ~ 72322979 (-) True G32571
TU43806 lncRNA upstream 41093 72559388 ~ 72563499 (-) True G32645
TU43825 lncRNA upstream 77607 72595902 ~ 72596898 (-) True G32658
TU43826 lncRNA upstream 78735 72597030 ~ 72597468 (-) True G32659
TU43827 lncRNA upstream 81910 72600205 ~ 72600426 (-) True G32660
TU43833 lncRNA upstream 90410 72608705 ~ 72610143 (-) True G32665
XM_007260662.3 mRNA downstream 96307 72398791 ~ 72402415 (-) True bloc1s2
XM_007260659.3 mRNA downstream 467082 72013255 ~ 72031640 (-) True prkaa2
XM_007239522.3 mRNA downstream 1308747 71180928 ~ 71189975 (-) True LOC103032944
XM_007239521.3 mRNA downstream 1321516 71174229 ~ 71177206 (-) True pigc
XM_007242523.3 mRNA downstream 1392903 71099602 ~ 71105819 (-) True ccnk
XM_022666060.1 mRNA upstream 4370 72522665 ~ 72527600 (-) True bsnd
XM_015608682.2 mRNA upstream 4370 72522665 ~ 72527444 (-) False bsnd
XM_022666098.1 mRNA upstream 53184 72571479 ~ 72579512 (-) False lexm
XM_022666093.1 mRNA upstream 53184 72571479 ~ 72579509 (-) True lexm
XM_007245319.3 mRNA upstream 95143 72613438 ~ 72619980 (-) True LOC103032851
TU43689 other downstream 256452 72241530 ~ 72242270 (-) True G32557
TU43617 other downstream 516669 71979060 ~ 71982053 (-) True G32492
TU43449 other downstream 1356384 71138486 ~ 71142338 (-) True G32364
trnat-ugu_81 other downstream 1402019 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43425 other downstream 1409261 71088875 ~ 71089461 (-) True G32343
TU43757 other upstream 9488 72527783 ~ 72542447 (-) True G32611
TU43886 other upstream 179378 72697673 ~ 72698010 (-) True G32714
TU44174 other upstream 869567 73387862 ~ 73388612 (-) True G32914
TU44213 other upstream 1034120 73552415 ~ 73552883 (-) True G32946
XR_002649482.1 other upstream 1239675 73757970 ~ 73778866 (-) False ak9

Expression Profile