RNA id: XM_015601184.2


Basic Information

Item Value
RNA id XM_015601184.2
length 3873
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC103029737
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46317964 ~ 46329110 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATAGTGGCTATACAACAGCAGCACACAGCACGGATTAATGAAGTTCACCTTGATAGTGCCACTTAATCTCTCCTTCCTGAATGAAGCTGATTCTTTGCTTGAGCTTAATGTAGATGCTTAAGTGGTCCCATTAGCGTCCAGAGCCTTCTTCTAGATAGCATCAACAGAAGACGCGGGCGGTGATGAGAGGCCCTCCCTGCTTTTTTCCTCAGTTCTGAGAGGTTTGAGTttgggcagtagcagcagcagtataaCAGTAGTCGTCCAGATAGATGATCCATCCACGTTTCTCCTgacgcttcctatagcttcttCTTAGGCTCCTAGGGGGGGTGTAGGTAGGAATGCATGCTTTTCCAAAGCTCTCCAAAGGCACAGTGTGGAGCATGCACGTCCACCTGCAGTGTGCAGTACTGCGCCACAGCAGAGGAGGGGTGTGAAGTGGAAGGCTTACGGATGGGACACCTGCTCCATCCTCCCAGCCTGACACCACTGGAGGCCATATTTGGGGCGGGTGAGGCGGTGGTACTGATGGTAGTGGTGGTAGAGTAGGGATGGATGTGGGAGCAGACATGTGCTGGGGTGAAGTGATCTGAGAAAGAGCCGGGCGTTTCTTCTCAGTGAGGGggaaaaagagtaagagagagagaaagaaagagaggataaTAAGGGAAGCTATGCATATCTGGAGAGAAGACATGCAGGAGCAACAGAGGCGCGGAGAGACAGAAATGAAGGGTCTCTGAAGAAGGCGGACCCCTTTCCTCCTtcttcacacactgcacacgTTGGGACTGCTTGCTTTGGTTGCTTTTTCCTCTCTTGTGCTCGCGTCTCTTCTTCACTCCTGCAGAGATGGGCTTCTTCTTGAAGGACGCGCGCGTACCCGGAGCGCATCGCCGTCTTATTTGACCATCGTCGCCCCTCTTTATTATCTATCTGGGTCATCCGAAAGGAGCTTGGAGCAggtggatgcatggatggatagatggacggATGGACGGACCGCATGGACGAAACGAAAAATGACTGAGTAATTCGCAAAGGAAAACGACGGCTTTTTCAGCAGCTGCAAAGCTAATCTCCCTCTTATCTCCACAAGGTGTGTTATCACAACAGTGAATCCAGATGGAGACGCTATTTGTTTACTTGGTGGTCATTGTCATGGCAGTAAAAGCCCAGAAGATCCAAATATGTCCCAAACGCTGCATTTGTCAGGTGCTGTCTCCCAACCTGGCCACCTTATGTGATAAAAAGGGGCTGCTTTTTGTGCCCCCGAACATTGACAGGCACACTGTCGAACTGCGGCTGGGTGACAATTTTGTAACGACCATTAAACGGAAGGACTTtgccaacatgaccaagcttgTAGACCTGACCCTCTCTAGAAACACAATAGGCTCTGTGGCACCTCATGCTTTTAACGACTTGGAGAACTTGCGTGCCCTACACCTGGACAGCAATCGTCTTACGCGCATCACGAACGACACGTTTAGCGGTATGTCCAAACTCCATCATCTCATTCTGAATAACAACCAGCTCACTTACATCCACATCGGAGCCTTTAATGATCTCCTGGCCCTCGAGGAGCTTGATCTATCCTACAACAACCTAGAGGGTGCTCCATGGGTGGCCATCCAGCGTATGATCAGCCTCCACACCTTAAGCCTGGACCATAACATGATTGATTATATACCTGAGGGGACGTTTTCAGGACTCCTGAAGCTCAAGCGACTAGACGTTACCTCCAACAAGCTCCAGAAGCTTCCACCGGATCCGGTCTTCCAGCGAGCAGGTGTTTTGGCCACCTCAGGTATCTTGGGGCCATCATCATTTGCACTGAGTTTTGGAGGGAACCCACTGCGCTGTAACTGTGAGCTGCTGTGGTTAAGGAGGCTGCGGCGTGAGGATGACCTGGAGACGTGTGCGGCTCCCCAACACCTTTCTGGACGCTACTTTTGGACAGTGTCTGAGGAAGAGTTTCTGTGTGAGCCTCCTCTCATTACACGTCACTCGCAGGAGACCAGGGCATTGGAGGGTCAGCATGTTACCCTGCGCTGCAAAGCTCGGGGGGACCCAGATCCCGTCATCCACTGGATCGCCCCTGATGGAAGGCTGGTTTCCAACTCATCCAGAACGGTTGTCCACAGTGACGGGACACTAGAAATACTCATTAGCACAGTGAAGGATTCAGGTTCTTTTACCTGTGTGGCGTCCAACCCATCTGGAGAAGCTCAACAGAGTGTGGACTTGCTTATCACCAAACTTCCGCATTTCACGAATGACACAAGCCTGGTCCAGGAGCCTGACCCTGGCTCGTCAGACATTGCTACATCCACTAAAGTGGGTGGAGATGGAAGCCCTGCCATTGGCAACACCAAAGCTGGACAAGAAAAGCGGGTGGTGATCTCTGAAATCACGTCCTCCTCAGCCCTGGTGAAGTTCAACCTGCAGCGGAATATTCCAGGGATTCGGATGTTCCAAATCCAGTACAACGGCACTTATGATGACTCTCTGGTGTACAGAATGATCCCCCCAACCAGTAAAACCATCCTCGTCAACAATTTAGCAGCTGGGACGCTGTATGACCTCTGTGTGCTAGCCATTTATGATGATGTGATCACCACCCTGACGGCTACACGTGTGGTGGGATGCCTTCACTTCTCCACAGAGCCCCAGTATCTCCGCTGCCACTTCATGCAGTCCCAGTTTCTCGGAGGCACCATCGTCGTCATCATCGGAGGCGTCATCGTGGCCTCTGTCCTGTCTTTCATCATTTTCCTCATTGTGCGCTACCGGGTTTGCAACCAGGAGGGAGCAGACAAGGGGGTGGAGCTGGGTGACTTGCGTTCGCAGTCCAGGAGTGAGCAGCTGCAGGGCTGCGGAATCATCAAATCCATGTCAAAGCAGGTTCTTGGTGCAGAAAGGGACTCCTGCCGGAAAGTGTCACCACAGATGGAGTCAGTTCCAGCTCCTGCTCAAGCCGTGGCGCCCCAGCCGAAGCCTCGACCGCCCCCTAAACCCAGCCTCCCCGACTGCACAGTGTCTACCTCTGCCGCCAGCCACAGCTGGCACCCCGCCTCTCCCAACACCCGACGCCCCGCGCATGCTGTCGCCGCCGCCACCGCTAAACCTGCCATCCCACATAAAAAGGACACGCAGGTCAGCATGGAGCCCGacaacagcaacaaaaacaaCTCAACCAAGGCTCGGCCCAAATCGGCTCAAATCCGGGCCTACTCCACCATGGTGACCCCGGCATCCAGGAGAGCACAGCTGGAATCCTTGCACAACTACATGACTGTCCCGGTGGGGTACGCGAGAGTGAGCCGCAGGCACTCTCTGAATGTAGACTCCTGTAAACAACCAAGTTACATGActtaccagcagcagcagcagcagactggCAGCCTGCGCTCCAAACGCAGCCTGTCGATGAGCGGCGATCTGCCCCAGTTGGACACTTCAGGCAGACTCCACGGGAAAGACTCACTGTCCAGATCAGAGTGGGTTCTAGAAAGCACACTATAAtgaagatttttattttgttaaaaatctTACTGCATTGGTTTTTGATGGACTCACAGATCCTATTATGATCTGATGTCTTATAGCTAAGACTGCGaaccttttaaaaagtcttCAGATTCCATCTTGGACATGGCACTCTTATAttatgtgaattaaaaaaaaagagaaacctAACATAAAGGACTGGTACATGCCAATGTTTTTTAAGCACAAGCAAAATACcattttctgcatattctaaAATAATCCCACCTGTACACTACTTTGTTATATGGAATAATACATATGGTACATCGTGTACAAACAtgttacattgtgtaaaataaaatgtgaaaagccA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35757 lncRNA downstream 155865 46076136 ~ 46162099 (-) True G26605
TU35764 lncRNA downstream 250776 46066648 ~ 46067188 (-) True G26612
TU35706 lncRNA downstream 468372 45847617 ~ 45849592 (-) True G26564
TU35704 lncRNA downstream 473033 45843174 ~ 45844931 (-) True G26563
XR_002652433.1 lncRNA downstream 575114 45733316 ~ 45742850 (-) True LOC111197418
TU35832 lncRNA upstream 32608 46361718 ~ 46361918 (-) True G26663
TU35837 lncRNA upstream 66851 46395961 ~ 46409064 (-) True G26666
TU35838 lncRNA upstream 66851 46395961 ~ 46409064 (-) False G26666
XR_002652516.1 lncRNA upstream 249177 46578287 ~ 46599431 (-) True LOC111197648
TU35951 lncRNA upstream 333009 46662119 ~ 46663963 (-) True G26751
XM_022686938.1 mRNA downstream 188722 46112627 ~ 46129242 (-) False LOC103025714
XM_022686929.1 mRNA downstream 188722 46112627 ~ 46129242 (-) False LOC103025714
XM_022686908.1 mRNA downstream 188725 46108572 ~ 46129239 (-) False LOC103025714
XM_022686922.1 mRNA downstream 188725 46108572 ~ 46129239 (-) False LOC103025714
XM_022686917.1 mRNA downstream 188725 46108572 ~ 46129239 (-) False LOC103025714
XM_022687006.1 mRNA upstream 296 46329406 ~ 46337541 (-) True LOC103042705
XM_007230704.3 mRNA upstream 23099 46352209 ~ 46360826 (-) False LOC103043020
XM_022687038.1 mRNA upstream 23099 46352209 ~ 46360826 (-) True LOC103043020
XM_022678311.1 mRNA upstream 35019 46364129 ~ 46374917 (-) True LOC111194350
XM_007230708.3 mRNA upstream 58549 46387659 ~ 46395067 (-) False LOC103044046
TU35796 other downstream 25158 46292087 ~ 46292806 (-) True G26636
TU35737 other downstream 382342 45935153 ~ 45935622 (-) True G26588
TU35470 other downstream 880379 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 1432163 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 1447285 44867094 ~ 44870679 (-) False ubxn2a
XR_001518806.2 other upstream 98307 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 189761 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 194538 46523648 ~ 46525996 (-) True G26695
TU35943 other upstream 204585 46533695 ~ 46535753 (-) True fkbp3
TU35957 other upstream 375237 46704347 ~ 46738736 (-) True G26754

Expression Profile