RNA id: XM_015604828.2


Basic Information

Item Value
RNA id XM_015604828.2
length 2543
RNA type mRNA
GC content 0.43
exon number 7
gene id opn5
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73219526 ~ 73247185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGGTCAGGGTGctgcagggcagacagacagttGTAAGAGCTCtcactctgagagagagagagagagagagagagagagagagagagcggagtCTGGATTATGGAGAAGTTAACAGCTCCACTCTGAGGAGACGCTGAACGCTGAGACCTGCGGCACAGTTCACCCACAGAGAGCGGGGGGCGATGCTCCTACACTCCTAGACAAGAAGCAGACTCCAGAGCCCCTATGGAGAACGAAACTTCAGTGCACACAGGCTACATTCCCCCTTATCTCCTCCGACAGGACCCTTTCGCCTCCAAGCTGTCCAAAGGGGGCGACATAGTGGCAGCCTTGTACATCCTCCTCATTGGGATCCTCTCAGCTATAGGAAATGGTTATGTTATCTACATGGCCATCAGAAGAAAGACAAAGTTAAAACCACCTGAAATAATGACTCTGAATTTAGCCATATTCGACTTCGGCATCTCAGTCACTGGGAAGCCATTTTTTGTAGTTTCGAGTTTTGCCCACCGCTGGCTGTTCGGCTGGGAGGGCTGTCGCTTCTACGGCTGGGCCGGCTTCTTCTTTGGCTGCGGCAGCCTCATCACCATGACTGTGGTCAGCTTTGAACGATATCTGAAAATCTGCCATTTAAGATACGGTACATGGATCAAGCGGCATCATGCCATGCTGAGCCTGCTCTTCATCTGGCTGTATGCAGCCTTCTGGGCCACTATGCCGCTGGTGGGCTGGGGCAGCTACGCCCCGGAACCGTTCGGCACCTCCTGCACACTGAACTGGTGGCTGGCCCAGGCCTCTGTAGCAGGACAAAGCTTCGTCATGTCCATCCTCTTCTTCTGCCTCGTCCTGCCCACGGTCGTCATCGTCTTCTCCTACGTCAGAATCATCATCAAGGTGAAGGCATCCGCTAAGGAAGTGTCCTGCTACGATGCCCGGAACAAGAACAACCACCTCCTGGAGATAAAGTTAACTAAGGTGGCAATGTTGATCTGTGCTGGATTTTTAATAGCGTGGATTCCGTATGCAGTGGTGTCAGTGATCTCTGCATTTGGGGTGCATGATTCAGTGCCTATTCCAGCTTCAGTCATACCAACTTTACTGGCCAAATCCTCCGCCATGTACAATCCCATCATATACCAGGTCATCGACTGCAAGAACAGCTGCTCTAAATCCTGCTGCTTTAAAGTCTTGAGCAAAAAGAAACAGTATAAATCTCCAAGGTTTTATTCTATCTCGGCATCCATCAAAGAGAGACCAGCAACAGAACCGCAAATTGAGATGTGAAAACGTCTGATAAAGTCAGATTTTACACTGGACATTTTTTCTCCTACATTAGTGTCATCCTCCCCATCAGACACCACGGACTGATCCATGACTGAATTAGCCTGCACTGTTTCTGCTGACGTTCCATTGCCTCTGGAATACTTAGTGTTATACATGTATTTGCAGACAGATGCTGTGATAAAgatatgtgtatttttatattttgtacagGTACTACATATATAACAGTCATATTCTGTGTGCATCTGCACTGTTTAAAGTGCATTGAACTTTACAGTGTGGTGATTCATAGCACAATACACTATATAAATATCAGCAGTATGTTTAAATGGAGAAAGCAGTACTTTGCATCAGTTGTGTTAAGCAAATACCAATCTTGCAGATTGTTCTAGTTAACAGTCTGTAATTTAAATCTAAGTTTACATTACTTGAGATGGACACAAGCGCTGGGTACTACACATACACTGCCATGTCTACACAAGTCTGTACAGTaatgtgtgttaaaaaaagaatattaagaGTAATATTTTTCTCAAAGCGATAAAACACTATgcactaaataaaacattgttaccttgtatttaaacatttctggCACATCAGTTTTGTTAAGGGTAATGTGCAATTGTTGTTTTAAAGGGATAATTcatcaatataataatattatattgtgcAACATATTTCATGCCTTTTTCTAGTGTTGTCTGTTATTTTGGCTACTACAGATTTATATTGAAACTGTAAGCCTAAATGTGTGAATAATGAGatgaaattattattagataATAGATTACTGTTCAGTTACCACGTCTGTACTGCTGTACATCACAGTAAGTGAGTGTACTGTAATTGTCCTGTACTCACTCAGCTTCAACGTCTTCATCCATTTATGTTCCCTCTTTCCTTATTCTTACTGCGTTGtccctgttctttatatttgGATCATCTGGACCAGATGTTTAATTAAAGCTTATTAAATAGAAGGAGTTAAACAAATTATGCCAGTGATTCTCCTCTGTGCTGATCTTGGTTTACCACTTCAGTACCATTTCAAGCCTgttatgtgcgtgtgtgtgaacCAGGGCTCATGGAATTGAGTGGCaatgaaaacactttttaacatgCTAAATGTTAAATGCTACTGGTGGGTAAACCCAAAAAAGTGACCCAATGGATTATAAGGATTTGAAGTCAAAATATGCAACGTAAATCAAGATCATTgatttaaatgacatttttaaaaaaggtgatttgaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08385 OPN5; G0-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44108 lncRNA upstream 60535 73144652 ~ 73158991 (+) False cd2ap
TU43982 lncRNA upstream 139952 73047002 ~ 73079574 (+) True G32778
TU44014 lncRNA upstream 156861 73061705 ~ 73062665 (+) True G32806
TU44000 lncRNA upstream 234663 72981012 ~ 72984863 (+) True G32793
TU44128 lncRNA downstream 15130 73262315 ~ 73264493 (+) True G32885
TU44129 lncRNA downstream 17815 73265000 ~ 73265399 (+) True G32886
TU44154 lncRNA downstream 101012 73348197 ~ 73348620 (+) True G32905
TU44206 lncRNA downstream 294547 73541732 ~ 73541987 (+) True G32939
TU44216 lncRNA downstream 323808 73570993 ~ 73571378 (+) True G32949
XM_007245401.3 mRNA upstream 23306 73144650 ~ 73196220 (+) True cd2ap
XM_022666236.1 mRNA upstream 23306 73161688 ~ 73196220 (+) False cd2ap
XM_007245386.3 mRNA upstream 371712 72833413 ~ 72847814 (+) True LOC103025777
XM_007245384.3 mRNA upstream 387911 72823559 ~ 72831615 (+) True LOC103025272
XM_015604831.2 mRNA upstream 397249 72815642 ~ 72822277 (+) True LOC103024428
XM_022666270.1 mRNA downstream 191871 73439056 ~ 73506987 (+) False LOC103030552
XM_022666274.1 mRNA downstream 191871 73439056 ~ 73506987 (+) False LOC103030552
XM_022666261.1 mRNA downstream 191871 73439056 ~ 73506987 (+) False LOC103030552
XM_022666278.1 mRNA downstream 191871 73439056 ~ 73506987 (+) False LOC103030552
XM_007245417.3 mRNA downstream 567785 73814970 ~ 73820823 (+) True LOC103034574
TU43802 other upstream 622589 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 1239163 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 2049970 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 2078342 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 2143640 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 191871 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 743320 73990505 ~ 73992259 (+) False selp

Expression Profile