RNA id: XM_015604839.2


Basic Information

Item Value
RNA id XM_015604839.2
length 4069
RNA type mRNA
GC content 0.50
exon number 28
gene id LOC103027377
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43599657 ~ 43664802 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCTGAAAAGTGAAAGGATTGttattgaATCCAGTGGAGCACTAGGTGGATGCTCGCTTGAGACCACAGACCCTGTAACAGTCCATAGTCCAGAGATCCACTTATGTGACAGAGCAGTGCAATGATGGCGGACGGATGTGAATTTGATCTGGACTACATCACAGAGCGGATCATTGCCGTCTCCTTTCACCAGGCATGCCCAGAGAAAACCTATCTGCAAAACCTACACAACATAATGCAGATGCTGCACTCCAAACATTCAGACAACTACTTGGTTGTGAACCTCTCAGAGCCACGAGAGGAGCTGAAGAAGATGAACCCCAGGGTGATAGATGTTGGTTGGCCTGAACAGCACGCCCCATCCCTTCATCTTCTGTGTTCCATCTGTAAAAGCATTGAGAATTGGCTCAACACTCAGGTTGAgcatgtgctgctgctgcactgcaGGGGTGGCAAAGACAGGATTGGAGTCGTCATTTCATCCTATATCAACCTTCCTAGCGTATCTTCAAGtgaagAGCAGGCTTTAGACTGCTACACCATAAAGAGGTTCTACAGTGATAAGATGGCTCCACTGATAACTCCGTCCCAGAAAAGGTATGTGCAGATGTTTGGCAAGCTCCTGAGCCATCAGTTAAAGATAAACTCCTCTCCACTCTTCTTCCACTGCATCTCCctccaccacatcccaaagcttCACCCTACAGTATGCCATCTTTTTGTGAGGGTATACCAGAGCATGCAGACAGTGTGCACTACAGGAGTACAtcAGATTGCTGTtggtcagacagacagagtttATTTTGCTCTGGAACCTCCACAGCTTCTCAAAGGTGACATTATGATTGTATGCTATCATAAAGATGTTTCAAAGGGAACCAGGGAGCCTGTGTTTCGCATGCACTTTCACACAGGCACTGTCCACGGACACCCCGCCTTGTTTCGAAAAGAGGACCTCGATCTTGCAAACAAAGATCCAAGGTTTCCAGAGGATGGAGAGGTGGAGGTTGTTTTTTCAGAAACTACAGAGAGAATTccaggctttccacaagGCAGTGGTGGCTGGAGGAATAGCTCTGCTGTTGTTATTGACTATGACACTTTGGATCCTCTCGTTCACTGGGACTCCTATGAGAACATTGCAACAGAAGGTAAGAGGAATGAGCGTGCCCCCTCTGTGAGCAGTGATTCTGGACTCTCCAGCAACTCTCAGTGGGCTGGAACTCCAGGCACTGGACTCCACATTGGCCACAGCCCTGAGGAACGCGCTCAGCTCCAGAAAACCACTGCTGGAGACAACATGGAGGGTGATTTGCCCCATCTGGAAGTCATGACCCCTGAGCATAATTCTACTGATGAAAGGGACAGATCAACAGAGGGAAAATCGCACGGCTTAGACACTTCCTTTCATGTCAACGGTGAAGCTGCAAGCACAGAACGAGAAACCGATATTCTAGATGATGATCATGTTAACGGCATCACTGCTTCTTTACCAGATTCTACAGAAACAAGTCATAAGTGTCCTGCTTTGTCATCACTTGCTGGATCAGAGGATGTTAGAGATGGAGCATGCCCCCCAGCCTCCAGCGAGGCATACAGTCATGGAGTGAACTCTACACGGATTCTCACACACAACACCGTGTCCAGCGGCTTTCAGACGCACATGTGGGTCAGGCAACAGCAGCTAGTCTCTGCTGATTCTTACATGTACCCCCCATCAGACAGACTGGAGCAGAGGTTGGAGGTGGGGCTTGAAAGTGTGAGGGGCAACTCCACCTTACCGACCGGTGGTGCTCCACAGGTGGAGCCAGAGGCGGAGCAGGATGATGAGTTTGCCTCCCTTGCAATGGATATTGACCAATCAATTGAACAGCTGAACCAACTGATCCTAGACCTGGACCCTGAGTTTGAACCAGTGCCCACAAGGGCCAGGAGTCACATGATGCGTTCAGCCTCTCTCCACACCAATGGAATCGGCCGTTCGAATGGACAAGCAAAATCCAATCAATCAGgttGGAAGCGTAGGCAGATAAGTGATGTCACCAACCAGCCTCGATTCAGGAGTGCCGCTGGTGATCTGTTACTGGTGTCACCTAAGCCTCCTCTCTCTAAACTGTCCCAGTTTGGGGCTGTTTATGGCACTGACACTGTGGACTATGGAGAATTCAATCCTCAGGCTGACAGATCTTTATGGGTGGACCTTAACCATCCTCCAGCAACACCAGCATTTCCAGTGTCACCTCCCACACCTTATGTGAAGAGCGTGTATGACTTCAACCACGTAGACCACAGCCCTCAGTCCAGTGCACAGCACCTGCTCTCAAGGACACAGCAAGAGTCACGGGGGTTTGTGGACAGCATGACACACACTCCCATGTCATCAGATGGAGATCTGTTTCGCACTGAAGTGACGTCGAGTCCTGCCTCCTGCCAAAGGATATTTGGATCCATGCGATCAGTCAACACATCCAGCCCGCTTCCCGTCAGTGACAGCCCAACTGCAGTTCATTCCTGGTTGGAGAGTGGCTCTAACACCCCACTGAGTCACTACACACCCCAGCCCTCTCCTCCGCTGCCCCTTTCTGCACCCAATGCTCACAGCTCCCCCCGGGGTGGTGCCCGCAGTCTGTCCTCCTCTCTAGGAGTAGGAAGCTTGGAGCACAGTCTGCTGGAGGCTATGGAGGGTCTGGAGTCTCTGGGCTTAGAAGGAATACAGCCTCCGCTGTTGCCCCAGAAGAGGAGAGGGGTGGATGGTGGGGACATGTTCCTGAACTCATCACTCAGCAGGACTGCAGTCAGTAACAATGGATCACCTACAGGATCAACACCGAGCCCAGATCCATTGTCCGGTAAACCTGACAACGCAAAGTTCGTCCAAGACACATCAAAGTTCTGGTACAAACCGGACATCTCCAGAGAGCAGGCTATCACTGTGCTAAAGGATAAAGAGCCGGGATCCTTTATCGTCAGAGACAGTCACTCCTTCAGAGGAGCGTATGGACTGGCCATGAAGGTGGCCACGCCCCCTCCCTCCATCCTACAGCAGAGCAAGAAAGTGGGGGATCTGACCAATGAGCTTGTGCGCCACTTCCTGATAGAGTGTACACAGAAAGGAGTGAGGCTGAAGGGCTGTCCTAATGAACCCTACTTTGGTAGTCTTACTGCTCTTGTTTGTCAGCACTCCATCACACCACTGGCTTTGCCCTGTAAACTAATCATCCCAAGCAgagATCCTCTAGAGGACCTTACTGAGTCTCAACAACAGACTTCCACAAATTCAGCAACGGAGCTACTGAAACAAGGAGCAGcGTGTAATGTGTGGTTCCTGGGCAGCGTAGAGTTGGAGTCTCTGACAGGAGTGCAGGCCATACAGAAAGCCTCCACAGTAATCCTCGGTCAGAACCCTCCGGCCACCTCCACCATCGTCCACTTTAAAGTGTCTGCACAGGGCATCACGCTTACAGACAATCAGAGGAAATTGTTCTTCAGGAGGCACTACGCTGTCAACACGGTCATTTTCTGTGCTCTGGACCCTCAAGATAGAAGGTGGACAAAAGACGGCTGTTTGGCTGCAAAGATCTTCGGCTTCGTAGCGAGGAAGAGCGGCAGCAGCACAGAGAATGTGTGTCACCTGTTTGCAGAACATGATCCTGAGCAGCCTGCCAGCGCTATCGTCAACTTTGTGTCCAAGGTGATGATTGGCTCTCAGAAGACGAAGTAGAGCCACGCCCACCAGGAGCATTTCCAGTACTACGCTCTATGCTTGGTGATTCTTCATCACATTCCCCATATCACTTAAACACTGCACTCTGCATACAACCCATATGGCTAGATCTTTTACAGATTTTCTACAGTGCCTAAAGGGGTTCTTTACGTCATTGAAGAGCCACTTTTTAGTTCTGTAACGAATATTAGAACCTTTCAGCTGTTCTATAAGGGAATACTCCAGTGTGGTGCTTCGTTATGGATGTAATTGTGATGGGTCACCACATTATGTGTGTCAGTATGTCACCCTGagtgtgatgatgtgatgatgttgcCAGTTTAACACAGCatggctttaaaaaa

Function

GO: NA

KEGG:

id description
K18080 TNS; tensin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34785 lncRNA downstream 82557 43516625 ~ 43517100 (-) False LOC103027084
TU34784 lncRNA downstream 83111 43495509 ~ 43516546 (-) False LOC103027084
TU34794 lncRNA downstream 115289 43484089 ~ 43484368 (-) True G25903
TU34793 lncRNA downstream 137503 43461669 ~ 43462154 (-) True G25902
TU34756 lncRNA downstream 236567 43360488 ~ 43363090 (-) True G25874
TU34914 lncRNA upstream 201574 43866376 ~ 43885038 (-) False G25986
TU34912 lncRNA upstream 203915 43868717 ~ 43885038 (-) False G25986
TU34910 lncRNA upstream 211826 43876628 ~ 43885038 (-) True G25986
TU34938 lncRNA upstream 234234 43899036 ~ 43899751 (-) False cbr4
TU34947 lncRNA upstream 257074 43921876 ~ 43924352 (-) True G26009
XM_022686394.1 mRNA downstream 82500 43495419 ~ 43517157 (-) True LOC103027084
XM_007230734.3 mRNA downstream 243657 43350893 ~ 43356000 (-) True mgat2
NM_001291257.1 mRNA downstream 258141 43336847 ~ 43341516 (-) True LOC103024454
XM_007230732.3 mRNA downstream 262988 43328607 ~ 43336669 (-) True LOC103024139
XM_007230738.3 mRNA downstream 282619 43295459 ~ 43317038 (-) False LOC103025090
XM_007245324.3 mRNA upstream 2045 43666847 ~ 43672990 (-) True LOC103034775
XM_022678289.1 mRNA upstream 24096 43688898 ~ 43703969 (-) True LOC103035096
XM_007245326.3 mRNA upstream 44926 43709728 ~ 43716198 (-) True LOC103035417
XM_007245330.3 mRNA upstream 225827 43890629 ~ 43899760 (-) True cbr4
XM_007245332.3 mRNA upstream 225866 43890668 ~ 43899727 (-) False cbr4
TU34644 other downstream 488256 43098822 ~ 43111401 (-) True G25785
TU34500 other downstream 881268 42717666 ~ 42718389 (-) True G25678
XR_002652156.1 other downstream 1733813 41857038 ~ 41865844 (-) False LOC111196508
TU34885 other upstream 10223 43675025 ~ 43678862 (-) True G25967
TU35290 other upstream 1104490 44769292 ~ 44799475 (-) False fkbp1b
TU35291 other upstream 1104490 44769292 ~ 44799475 (-) False fkbp1b
TU35356 other upstream 1202292 44867094 ~ 44870679 (-) False ubxn2a
TU35363 other upstream 1217976 44882778 ~ 44885801 (-) True G26295

Expression Profile