RNA id: XM_015607694.2


Basic Information

Item Value
RNA id XM_015607694.2
length 2148
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC103022293
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58925376 ~ 58934791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtgtggGTTTAGGTTAAATCTCCGATTTCTCACGCAGAGTGAGAGAGGCGAATGTGCGGAGCTGAATGAATGGGCGGAAAGAGAGAATTCAGCGGGGCTTAAAACTCCCAGTCAGAGAGCTGCAGGTACACACTGTGGCGTTACACGCGCTAGCAGGACCATCGATCCGGAGATTCCTCTGTTTTGAGGGCATCTCGAGTTCTCGGGGCTCTTTAGTCTCTCTGCTCTTCCAGCTCTGCTGACTCCTCCACGCTGTGCTGCAGCGCCCACACCACtagctaccaccaccaccactactaccAGCAGCAGCCGCCGCCGCCGCGCATCCTCCACACACTTCGCTGCATCTCAGGGCGGCCAGCGGTGTGTTTATGTCTTTGTTTTACGCAATCAGCGAGTACCTGGACGTCAGGAGCTGCGGATGGGAAAGagCTGTTGGACAGCTGTTGAAACCTGTGTGTGGGGAACCTAGCCTCCGAACTTGCAGTTTAGCGCCTGAGTGGCCATACCTTTTTCATGTCAGAGACACAGTCCTCTTGCAACCGTTTATGTCCTCCTCTCCTTTTGAGACAGAACAGACCAAAAATTGCCAATTCAAGATCTTCTCATCTTGCTGATAAACCCTACAACAGGCAAAAATGTCTGTCAATGTCAACCGCAGCGTTTTGGACCAGTTCTACCGCTATAAAATGCCCCGTCTGATTGCAAAGGTGGAAGGCAAAGGCAATGGAATCAAGACTGTCATAGTCAACATGGTTGACGTTGCTAAGGCACTGAATAGGCCTCCGACTTATCCCACCAAGTTCTTTGGCTGTGAGTTGGGAGCCCAGACTCAGTTTGATGCCAAGAATGACCGCTACATTGTCAATGGCTCTCACGAGGCAAACAAACTGCAAGACATGCTGGATGGATTTATTCGCAAGTTTGTGCTGTGTCCTGAGTGTGATAATCCAGAAACTGATTTGCACATCAATCCTAAAAAACAGACCATAGGAAACTCCTGCAAGGCCTGTGGGTACAGAGGCATGCTGGACACCAGACACAAACTGTGCACCTTCATTCTCAAAAATCCACCTGAGAATGAGAGTGGATCTGTcaagaaggagaaagaaaagaagaatcgCAAAAAAGACAAGGAGAATGGCTCCAGCGGTGGGGAGGCTGGAAACAATGACATTGATGCCCCTGATGCTGTGGATGGGGATGACGACGATGAAGACTGGGCAGAAGAAACCACAGAGGAAGCCCAGCGGCGCAGGATGGAGGAGATCAGTGAGCATGCTAAAGGTCTCACACTGAGTGAGGACTTGGAGAAAACTTTGGAGGAGAGGGTCAACATGTTCTACAACTTTGTGAAGCAAAAGAAAGAGGAGGGAGTGATCGATTCCATTGACAAGGAGATCCTTGCTGAAGCAGAGCGACTGGAGGTGAGGGCAATGGGTCCACTCATCCTCAGCGAGCTGCTCTTTGATGAGAACATCCGTGAGCAGATCAAGAAGTACAAGCGCCACTTCCTCCGTTTTTGCCACAATGATAAAAAAGCTCAGAAGTACCTCTTGGGTGGTTTCGAGTGCCTGGTAAAGCTTCATCAGAGTCAGCTGCTGCCCCGTGTCCCCGTCGTTCTCAAAGATCTGTACGACTCGGACCTGGTGGAGGAGGATGTCATACTCGCATGGGCTGAAAAGGTTTCTAAGAAGTATGTCTCCAAAGAACTCGCCAAGGAGATCCATGCTAAGGCTGAACCATTCGTGAAATGGCTGAAGGAGGCAGAGGAGGAAAGTGAGGGCagtgaggaagaagaagaggaagatgaagacaATGTGGAGGTGGTGTATTCCTCTTCTGCCCGTGAGCTCAAGATGGAAGCAACAAAACCAGAGAAGTCTGAAAAAGAAGAGGATGACATTGATATCGATGCCATTTAAAAGTAATGAAGTTGCCTCTCGACACTGGTCAGCAAAGCTGCTGGTGGTCAGATGCATGCCTTCACATCATTTCTGCTCCTCCGCTGTAGGCCTGAGTTTAGTACTTTGCTAGAACgccttattttagtgatttcaCAAGCCCTCTTGATGAACTGCTTTCTTTTATCCCttccttgtattttttttttttttcttcaactaTTAAAGAATGTTTGCCAGTGA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03262 EIF5; translation initiation factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649734.1 lncRNA upstream 30036 58888723 ~ 58895340 (+) True LOC111191936
TU39289 lncRNA upstream 37027 58888118 ~ 58888349 (+) True G29290
TU39275 lncRNA upstream 64549 58860500 ~ 58860827 (+) True G29276
TU39260 lncRNA upstream 74946 58849977 ~ 58850430 (+) True G29267
TU39256 lncRNA upstream 99640 58824249 ~ 58825736 (+) True G29263
TU39299 lncRNA downstream 220 58935011 ~ 58948580 (+) True G29299
TU39310 lncRNA downstream 41871 58976662 ~ 58979697 (+) True G29304
TU39324 lncRNA downstream 129682 59064473 ~ 59112299 (+) False mtmr9
TU39325 lncRNA downstream 129682 59064473 ~ 59112299 (+) False mtmr9
TU39408 lncRNA downstream 284785 59219576 ~ 59219829 (+) True G29383
XM_022678389.1 mRNA upstream 17370 58897337 ~ 58908006 (+) True LOC103037011
XM_007256622.3 mRNA upstream 43185 58865600 ~ 58882191 (+) True LOC103021996
XM_022663662.1 mRNA upstream 105599 58804247 ~ 58819777 (+) True LOC103021664
XM_007258170.3 mRNA upstream 416901 58504802 ~ 58508475 (+) True LOC103031977
XM_022663632.1 mRNA upstream 444589 58457954 ~ 58480787 (+) True exoc2
XM_007256625.3 mRNA downstream 19310 58954101 ~ 58963663 (+) True LOC103022804
XM_007256630.3 mRNA downstream 157649 59092440 ~ 59112315 (+) True mtmr9
XM_007256631.3 mRNA downstream 180648 59115439 ~ 59123577 (+) True LOC103024478
XM_007256633.3 mRNA downstream 204789 59139580 ~ 59168498 (+) True pinx1
XM_007256634.3 mRNA downstream 245854 59180645 ~ 59184033 (+) True sox7
TU39139 other upstream 506559 58417394 ~ 58418817 (+) True G29155
TU38889 other upstream 1112888 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 1522984 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 2525935 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 2622166 56290756 ~ 56303210 (+) False LOC103033217
trnal-cag_8 other downstream 263411 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 285741 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 293277 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 293520 59228311 ~ 59228562 (+) False LOC111194375
TU39514 other downstream 619535 59554326 ~ 59559752 (+) False atraid

Expression Profile