RNA id: XM_015608431.2


Basic Information

Item Value
RNA id XM_015608431.2
length 3221
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC103042125
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64742654 ~ 64749709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgttaatATAATTTCAGGGTGTTCAGTAAATGTCaggtgctgtaaggaactttacacacattttaaggGTCTGTGGTCTGTAACACATACTTTACTATGGACtcgtttgagttaaatgaaagttgttttgttgtttagcCCAGtagcagttttgtttactgatATAACAGCGGAAACAGGAAGTGGGATTTGGCGGCAGAATATAAGCCTGGTTGCTAGGCGACAACCCTGTTCCGGAAAGTGCCCTACTGCGCATTTCAGAGAAACCGAAAGCAAAAGTGCAGGCGGCTCTTCCTCTCAGCGAGAGCTCAGAGAGATCAGTGTGAGCTGAGTGTGAGTTGAGTGTGAGTTCAGCACGATGGCAGAGGCCAGTATTTCTTTAGATGAGGAGAACTTCAACTGTTGCCTCTGTATGCACCTGCTGAAGGACCCCGTGACCCTTCCGTGCGGACACAGCTACTGCATGGCGTGTATTAATGAATTCTGGGACAAACAAGAAACCTTCGACTGCCCCCTGTGCAGAGCGAGCTTCGAGCCCAGGCCTGACCTGCGCAGGAACAACATACTGACTGAGGTGGTCCAGAAACTGCAGCAGACACACCTGCAGGGCTCTCTCTACCAGTGCTGGGACCTCTCTTCCTCTGAAGGTCAGGATGTGGAGTGTGATTCCTGTGTTGGGGAGAAGAAGAAGGCTGTGAAGTCCTGTCTGACCTGCCTGGCTTCATTCTGTGATGACCACCTCCAGGCTCACCGCGAGTCTGCCGCCTTCAAGAAACACACACTCGTGGCAGCATTCAGGAACCTGCAGGAGACCACCTGCACCAAACACAACAAACTTCTGGAGGTCTTCTGCCGCAATGACCAGAGACTCATCTGCTCTCAGTGTCTGTTGGACAAACACAAAGGACACAACACCGTCTCTGTCCAGGAAGAGTGGGAAGAAAAGAAGAAGTGCCTTGCAGATCTACAGAGAAAATACCAGAACAGACAGGAAACGAGAGAGAAAATTCTGCTGGAGTTGAAGGAGCTTATGGAGTCTTTCAAGCACTCTACACAGGCAGCAGTGGAGGAGAGTGAGAAGATCTTTGGTGAGCTCATCCAGTCCATTGAGAAAAGGAGATCTGAGGTGACAGAGATGATCAGAGCTCGAGAAAAGGCTGAACTGTATCAAGCCAGAGGTCTCCTGGAACAACTGGAGAAGGAGATtgtagaaataaacaaaaaacacactgatctaGACAAGCTTTCCCACACAAAAGATTATGTCGAGTTGCTTCAGAAATCTCAGGTTGTGTATACCGATACTGAAACCAATGATGCTATAAAGATAGCTCTCAATAAAGAGCCACCATTTGAGAAATTCATGACATCTGTATTGGAGCTGAAAAAGCAAATGGAAAGCTTCTGTGAGGATGGACTGAAGACCATTTTTAAAAGTGTGAACTACAAGTTCATTACAGATGCTGAGCCAGAAACCAGGGAGGACTTTCTCAAATATGCCCGTGTTCTATCTCTGGATCCCAACACTGTGAATAATAACCTCCTGCTTGAAGAGTGCAACACAAAGGTGATCAGTGACGGTATGAGCCATTCATACCCTGATGATCCTGAGAGATTTACCTACTGGCAGCAGGTGCTCTGTAAGCAGAATGTGTCTCAGCGCAGTTACTGGGAGGTTGAAGTGTGTGGTGAAAATGGGGTTTCTCTTGCAGTGTCTTATAAAGCAATTCAAAGAACTGGATGTGAAAAGGATAGCAGGTTTGGGCATAATCGTGAGTCCTGGAGATTAGTTTGCTATCCTTCTAAATACCGGTTCTGGGAGAATGATAATCAGATTGAGATTTCTGGACCGGCATCCAAAAGAATTGGTATCTATCTTGATGAAAAGGCAGGGACTCTTTCGTTTTACAGTGTTACTAATAAAATGATCCTCATTCATAAAGTCAAAACCAGATTCTCTCAGCCCCTGTATCCTGGGTTTGGGATAGGTTCTGACTCTTATGCAAAGCTTTGCATTTACGCCTCAAGTAATGATACTGGTGAGATCTCCAAGAAGAAATGAGACACTGTCTTGGTTGTAATGAGTAAAGATGATTTTAAGAAATACCTTCCAGTAATATCCAGTAATGATGAATAGTTGTTTACACATAACTCAGAGTTTCTGCCCACCTCAGCAACAAAGAAAAAGGTCAAAAGATTATGTATGTAGCCTAATGCAGAATTTTACATAGAAGCATAAGCCAGTGTTTGATATTTGTCGTGTTAATTTTATTTCCTATTTACCATTTACTTACAGAGGTAGTGAAAAGGAGTAGAGGTTAAAATGTCTACAGTGTTAATATAAGCgttatattaaaaacattagaaCAAATGTGTTTGgactaggggtgtgccgtatcgtatgcgataatatactgtttttagcaaaagaaaaattcacactgttctaatttcccattgtatatctactaaagacagattatatctgtccattatcatttattttactttaatcctggatatatggagatatttggagtgcattattattattagtatcatgacaatctggacattgacttctgttacaaatctgataaaattcttttattttttaatatatcagttaggggtgtatcatatcgtatgtagtaaaaaatattttcattttgttgcagtagtgtattttttaaatatttttttgtaattcagtgtttttcgcCAAGactatcgttatcgcgaaaacaccatgaaatatcgtgatattattttagggccatatcgcccacccctagtttggACGCTAGTTTTCCAACCACTATGAATgtatttaaaagtacattttatgtCAAAAcgtaagttttttttctgttaaatgtGAAGTTGTCGCTTgctgataaaaaacaaaacatgaaggaatttattaattatttattaggaTAAATCACTAAGTTGATTCAGTCGCTTACTTTAAAATGACAGCATGAACATGTTCATCCATAGATAATATAGCCCTCTTCAGTTCAATGTAAACATCTTCTGTTTAATTTCCTCAGTATTCTGTTATGTTATTTTGAATATCTTGCAGAGTTCTCTGATATttagtgacaaaaaaaaactcctaccctgttttaaaatataacaaagtaATGTATGAAGCACGCCTTATTTGTGTAATTGCCTTTAAATTTCTGACCAAATAAAGCTTTATTAAACTGCA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41109 lncRNA upstream 23616 64709323 ~ 64719038 (+) True G30640
TU41083 lncRNA upstream 120316 64615427 ~ 64622338 (+) True G30617
TU41081 lncRNA upstream 128546 64612960 ~ 64614108 (+) True G30615
TU41042 lncRNA upstream 196532 64544303 ~ 64546122 (+) True G30589
TU41041 lncRNA upstream 199233 64542115 ~ 64543421 (+) True G30588
TU41145 lncRNA downstream 2524 64752233 ~ 64774978 (+) True G30652
TU41146 lncRNA downstream 3817 64753526 ~ 64755851 (+) True G30653
TU41160 lncRNA downstream 39412 64789121 ~ 64791799 (+) True G30664
TU41112 lncRNA downstream 61670 64811379 ~ 64819664 (+) False G30643
TU41114 lncRNA downstream 61670 64811379 ~ 64824149 (+) False G30643
XM_022664587.1 mRNA upstream 414 64731659 ~ 64742240 (+) True LOC103042444
XM_022664596.1 mRNA upstream 414 64731659 ~ 64742240 (+) False LOC103042444
XM_022664566.1 mRNA upstream 14353 64712173 ~ 64728301 (+) True LOC103037884
XM_022664573.1 mRNA upstream 14359 64719450 ~ 64728295 (+) False LOC103037884
XM_007259513.3 mRNA upstream 40114 64694962 ~ 64702540 (+) True LOC103038194
XM_022664623.1 mRNA downstream 53515 64803224 ~ 64810333 (+) True LOC103041822
XM_022664626.1 mRNA downstream 76986 64826695 ~ 64834077 (+) True LOC111190912
XM_015608428.2 mRNA downstream 98939 64848648 ~ 64856825 (+) True LOC103041527
XM_007259506.3 mRNA downstream 109621 64859330 ~ 64868413 (+) True LOC103036008
XM_022664648.1 mRNA downstream 120142 64869851 ~ 64876715 (+) True LOC103035382
TU40713 other upstream 1396961 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 323892 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 324862 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 325407 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 348793 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 349582 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile