RNA id: XM_015608494.2


Basic Information

Item Value
RNA id XM_015608494.2
length 1717
RNA type mRNA
GC content 0.36
exon number 1
gene id LOC103035599
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39704128 ~ 39705844 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGATGGTTGTGAGCATATTCCAAAATGTGAGCTTAGGAAACACTTCACTTTGTTATGATCATCCTAACTCTTGTCAAAAACTGAGCTATCCACTGgcctttaaaattgtattttatttgattactgGTGTCATTATACTTCTTACATTATTTGGGAACCTTATGGTGATTGTAGCTGTTGTTCACTTCAAGCAGCTGCACACACCAACTAactacctcattctctctctggcTGTAGCTGATCTGCTTGTAGGAGGGGTGGTGATGCCTCCCAGCATGCTACGCTCTGTGGAGACTTGCTGGTATTTGGGGATAGTATTCTGTAAAATACACAGCAGTCTGGACATTACATTGTGTACTGTGTCTCTACTGAATCTTGCGTTTATCTCTGTTGATCGATACTATGCCGTGTGTCACCCTCTGCTGTACCACAATAAGATAACCCCTCTTGCTACTCTTGTTATGGTTGTGGTTTGCTGGAGTTTTTCTACAGTTCCAGCCCTGGTGATGATGTTCCCCCTGTCCACTAATGACGAAAGTGCCACCTTTTACCAGGAAGATGGAGTCTGCAAAGGACTCTGCATGATTTCTTTGACACCAGTAGCAAGCCTTTCCACTTCCCTGTTCTTGTTTTACATGCCTGCTATAGTCATGCTTTACATatatcttaaaatatatttagttgcACAAAGGCACTCACGTTTAATCCGCAATGCACAGGTTGCTCGTAAGAAAATGACAGTAAGCATCAGCAAATCTGAGAGAAAAGCTACTAAGACACTAGCAGTAGTCATGGgagtttttctgttgttttatgCACCAGTTTTCATTTACAGCATTATCATTCCAGTTTCTGGTTACACTGGCTCACCACAGTTGTTTGAAGTGCTTAGCTGGATTGGATATTCAAATTCTGCCTGTAATCCTATCATTTATGCGTTTTTTTACCGCTGGTTTAGACAGGCACTCAGAAATGTTCTACTtggtaaaatatttaatgaaaacTCTTCAAGAAGTGAATTATCCTCAGATTAGATGTACGATTTTTTTGTGCTGCTCTACTCATTAAACCTTTCCGATACATGCATATAAATGCAATGAAGTTTCAGTGATTTACACAAGCATTTAGTTTTCACCCTTTTTCACTTTTAGGATTACCAGTCACACTACAAATCAACACTACAGGGGCAGTTTTCCAGATAAAATGCCTATTGAAAGACAATTTAATCTAGACCCAGGCttaatccatgtctggtaaaacataaaactcaTAGAACAGTGCAGAGTGTAATTTGATAAAAGATTCATTAATGAGAATTCAAATAACAGAACCAGTAAGAAACTTTAGACACAGTGATTTAATCTACATCAGAATAAATATAATAGTGTTTTAGGCTAGAATTATATTCTGGTGCAGTTAGAAAGTCATATAcgacaaaaaacatatttggatTTTTAGGTAGGTACATTTCAttccacacatttacacacaaaaatgtttttgttttttttttcattacaagAATGAAAAGCAAGAAGGTAATTTTAAGCACTTGCGAAACTTTGATATAGTTGCGTTGTAACTGATCTGATAAAAAcatcttctgcttcttctcattaaaatatatatagacgTTTTCCTTTAGAAAATTTGTTCATCTGTGTGTATTCAATAAgcatcataaaataaaataaagaaatcctgCTGCTCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002652030.1 lncRNA downstream 179854 39514469 ~ 39524274 (-) True LOC111196215
TU33518 lncRNA downstream 204662 39499043 ~ 39499466 (-) True G24911
XR_002652028.1 lncRNA downstream 223784 39472824 ~ 39480344 (-) True LOC111196213
XR_002649667.1 lncRNA downstream 494863 39207714 ~ 39209265 (-) False LOC111191798
TU33461 lncRNA downstream 495015 39207480 ~ 39209113 (-) True LOC111191798
TU33580 lncRNA upstream 18611 39724455 ~ 39732479 (-) True G24964
TU33623 lncRNA upstream 113432 39819276 ~ 39825981 (-) True G24992
TU33636 lncRNA upstream 139529 39845373 ~ 39848209 (-) True G24997
TU33637 lncRNA upstream 139529 39845373 ~ 39848209 (-) False G24997
TU33712 lncRNA upstream 469708 40175552 ~ 40230788 (-) False LOC111196341
XM_022667875.1 mRNA downstream 3422 39699292 ~ 39700706 (-) True LOC103035296
XM_007259847.3 mRNA downstream 10946 39691978 ~ 39693182 (-) True LOC103036931
XM_015608503.2 mRNA downstream 37049 39665304 ~ 39667079 (-) True LOC103032818
XM_007259849.3 mRNA downstream 41812 39659836 ~ 39662316 (-) True LOC103037563
XM_015608500.2 mRNA downstream 46682 39656134 ~ 39657446 (-) True LOC103037243
XM_022678251.1 mRNA upstream 12845 39718689 ~ 39720722 (-) True LOC111194344
XM_022667889.1 mRNA upstream 21670 39727514 ~ 39728585 (-) True LOC111191820
XM_022667892.1 mRNA upstream 28003 39733847 ~ 39734968 (-) True LOC111191823
XM_007259844.3 mRNA upstream 44178 39750022 ~ 39751990 (-) True LOC103035909
XM_022685486.1 mRNA upstream 49633 39755477 ~ 39756680 (-) True LOC103031565
TU33508 other downstream 245939 39455236 ~ 39458189 (-) True G24903
TU33468 other downstream 357259 39273635 ~ 39346869 (-) False LOC103043888
TU33946 other upstream 1508577 41214421 ~ 41218829 (-) True G25265
XR_002652122.1 other upstream 1731912 41437756 ~ 41442494 (-) False arhgap11a
XR_002652156.1 other upstream 2151194 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 2151195 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other upstream 2151205 41857049 ~ 41865844 (-) False LOC111196508

Expression Profile