RNA id: XM_015608503.2


Basic Information

Item Value
RNA id XM_015608503.2
length 1776
RNA type mRNA
GC content 0.37
exon number 1
gene id LOC103032818
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39665304 ~ 39667079 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGGATGCACATAAAAAGAACAGTTTTAGctgttaatgtttattttgtggaataacacATCCGAAAGCCTTGAATGGACTCCCTCATAATGAATATGACTGCTGCAGAAAATGTGCTCCTCTGCTTCCCTCACCTGCCTGACTCCTGCCCCAGAGCACACCGATTCCTTGCGTTCAAAGTGATCATGTACTTTTTAATGATGGCTAGTATTCTAATGACGGTCTTTGGGAACTTGTTGGTCATCATcacaatttcttattttaaacagCTTCAGTCTCCAACCAACCTCATCATCCTCTCCCTGGCTTTGGTTGACTGTTTGTTGGGCTGTATGGTTATGCCCTTCAGTTTGGTGCGATGGTTGGAACGCTGCTGGTTTTTGGGAGAGATTTTCTGTCAAATACATTCTGGATTAGACATGACCCTCAGTATTGTCTCTATACTGCACTTGTGTTTGGTATCTGTTGACAGATACATGGCCATTTGTAAACCACTGAGTTACAGAATGAAAGTGACAAAtggcagtgtgtcagtgtgcaTTGCTGTCATATGGCTGTTTTCACTTACATATAGTTTCGGGGTTGTTCTGTCTAAAGTAAATGTTATAGGTCTGGAGAACCTTTTAGTACAAGCTCCGTGTGTCGGGAACTGTGCTTTGATTTTTAACTTACAGTCAGGAATTTCTCTTGCACTTGTTGGATTTTTTGTTCCGGGAGCTGTCATGACCACTCTGTACCTTAAGATCTTTCAAGTTGCAAGAAAACAGGCTAAAATAATGTCTGAAAGGGCAACTGTGAGACAGACTAATTCTGAAACAGCAGTCCATTCATCAGAACACAGGGAGAGAAAAGCAGCTAAAACTCTTGGAATTATCATGGGCATTTTTCTACTTTGTTGGCTGCCATTTTTCTTAGTTACTCTAACTGATCCACTGCTTGGGTTTCCTACACCATTAGATGTTTTTGATGCTCTGGTCTGGTTTGGGTACCTTAATTCCACGTTTAACCCCTTGATCTATGGCTTTTTTCATCCACGCTTTCAGAGAGCATTTAAGATCATCATATCAAAAGTTCTACACctcaataatgcaaataatttattactttaattCTAATTTGTCTTATTTCAcagacaggaatgagttttACATATTTAGTCAGTTACTCAGTATATTGGAAGGGGAAAACATTATACAATCCATGGATAACTTaggaacattgttattttaatcaCTATAACACATATAACACCATAAAAGGACAAAACTTAGAAATGCCTATTCTTCCACAAATCTTCATATTTCGTAAATGTGAGTGCTGTGTAATGTTTTATACAGACATATTGCAACAGTGACAGAAATAATAACCGTATACGCTTGATGAATTTAGGGATTAAGcaaagaacataaataaaaacaaactctGGCCCAATTGTAGACTTACCTTTACCTTTAAGTGAAGGCAGACATTGCATTTGACGTGTAAACTATTAGACGtgtaaactataaaatatattttaaaagtaaatgtacagCACTGTGAATGCCTGATTTTCATTTGTCAGAAAGAGCCTTTCTTGCTTGAATTTGTAGCCATGTATGTATTTTACAGCTGAAATGTTCTATTCCTGTTCTTTTTTCTGGTTCTGTTTGTCATCCACATTCaatggattatttttttctctttatttctttatttgtttatcttataTTActtaactttaaataactttaaacacACTGGATGTCTGAGGACAAGACAAACAGTACAATACAA

Function

GO: NA

KEGG:

id description
K05051 TAAR; trace amine associated receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002652030.1 lncRNA downstream 141030 39514469 ~ 39524274 (-) True LOC111196215
TU33518 lncRNA downstream 165838 39499043 ~ 39499466 (-) True G24911
XR_002652028.1 lncRNA downstream 184960 39472824 ~ 39480344 (-) True LOC111196213
XR_002649667.1 lncRNA downstream 456039 39207714 ~ 39209265 (-) False LOC111191798
TU33461 lncRNA downstream 456191 39207480 ~ 39209113 (-) True LOC111191798
TU33580 lncRNA upstream 57376 39724455 ~ 39732479 (-) True G24964
TU33623 lncRNA upstream 152197 39819276 ~ 39825981 (-) True G24992
TU33636 lncRNA upstream 178294 39845373 ~ 39848209 (-) True G24997
TU33637 lncRNA upstream 178294 39845373 ~ 39848209 (-) False G24997
TU33712 lncRNA upstream 508473 40175552 ~ 40230788 (-) False LOC111196341
XM_007259849.3 mRNA downstream 2988 39659836 ~ 39662316 (-) True LOC103037563
XM_015608500.2 mRNA downstream 7858 39656134 ~ 39657446 (-) True LOC103037243
XM_007259850.3 mRNA downstream 12243 39640238 ~ 39653061 (-) True stx7
XM_007259851.3 mRNA downstream 26573 39637361 ~ 39638731 (-) True LOC103038198
XM_007259852.2 mRNA downstream 35084 39629136 ~ 39630220 (-) True LOC103038525
XM_007259847.3 mRNA upstream 24899 39691978 ~ 39693182 (-) True LOC103036931
XM_022667875.1 mRNA upstream 32213 39699292 ~ 39700706 (-) True LOC103035296
XM_015608494.2 mRNA upstream 37049 39704128 ~ 39705844 (-) True LOC103035599
XM_022678251.1 mRNA upstream 51610 39718689 ~ 39720722 (-) True LOC111194344
XM_022667889.1 mRNA upstream 60435 39727514 ~ 39728585 (-) True LOC111191820
TU33508 other downstream 207115 39455236 ~ 39458189 (-) True G24903
TU33468 other downstream 318435 39273635 ~ 39346869 (-) False LOC103043888
TU33946 other upstream 1547342 41214421 ~ 41218829 (-) True G25265
XR_002652122.1 other upstream 1770677 41437756 ~ 41442494 (-) False arhgap11a
XR_002652156.1 other upstream 2189959 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 2189960 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other upstream 2189970 41857049 ~ 41865844 (-) False LOC111196508

Expression Profile