RNA id: XM_022662030.1


Basic Information

Item Value
RNA id XM_022662030.1
length 1839
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103035465
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48649688 ~ 48654677 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctctcagtcggAGAGCAGGAAAATGGCAGAGGTCTCTATTTCCATAGATCGGGATCAGTTCAGCTGTTCAGTCTGTCTGGATCTACTGAAGAATCCAGTAACTATTCCCTGTGGACACAGTTtctgtatagtgtgtattaatGGACACTGGGATCAGGAGGATCAGAGGGGGGTCTACAGCTGCCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTACGCAGAAACAACATGGTGGCTGAAGTGGTGGAGAAACTGAAGAAGACAGAAGTCCGAGCTGCTTCTCGTGCTCACTGTAACGCTGGAGCTGGAGATGTGGAGTGTGATTTCTGTACTGGGAGAAAACTCAAAGCCATCAAGTCCTGTTTGGTGTGTGTAGCGTCTCTCTGTGAAACTCATCTTAAACCTCACCTGGAAATTCCAGCCTTGATGAAGCACAAGCTGGTGAAAGCGTCCACACGACTACAGGAGAAGATCTGCTCTCAGCATGATAAACTGATCGAGATCTACTGTCGCACTGATCAACAGTTAATCTGTTATTTATGTGCGATGCATGAACACAAAGGACATGATACAGTTGCAGCTACAGCAGAAGAGAAACAGaaaatccAGGAGAGAATCCAGGATAAAGAGGAAACTGTGCAGGAACTCAAACAGGCGGTAAAAACTCTTAAGAGCTCTGCACAGtcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGGAACAGAGCTGATCAGAGATCAGGAGAAGACTGAACAGAGTGCAGCTGAAGAACTcattgaacagctggagcaggagATCACTGATCTAAAGAGGAGAAacactgagctggagcagctttcACACACAGAGGATCAAGTACACTTCATCCAGTCTCTCCACGTCTCTTCTGGATCTGATCAGTCACCCAACATCAGTGTCTGTCAGCATCTCTCATTTGATGAAGTGATCAGATCTGTATCTGATCTGAAACAGCAACTAGAGGAATTGTGTGAAGAGAAGTTCAGCACAATGTCTCCACATGCTGCAGCAGTTCAGATTTTACCCTCAGAACCAAAAACCAGAAAAGACTTTCTGAAATattaccGGCGGCTGACTCTGGATCCTAACACAGCACGTGCGCACCTCAGTCTTTTTGAGAAGAACAGAATGGTGAGACGCAatcatgatgttcagcagtatcctgATCATCCGGAGAGATTTGATTACTGGTGTCAGGTGTTGAGTAAGGAGAGTATGAGtggacgctgttactgggaggtTGAGTGGAGCAGTTGTCAATatgtgtacatagcagtgtcaTATAAAGGGATCAGAAGGAAAGGAGGATGTCATGAAGGTTGGTTAGGACACAGTAATCAGTCTTGGAGTCTGGTgtgttcttcctctctctctttctggcaCAACAACATTGAGACTAGGCTCTCAGCTCCTCCATCCGCCAGaataggagtgtatgtggatcACAGTGCAGGAACTCTGTCTTTCTACAGCGTCTCTGATACAATGACCCTCctacacacagtccacaccacaTTCACTCAGCCCCTCTACGCTGGATTTGACTTTCCTGATTATAATTCCACTGTAAAGTTATgtgatttaaaatgaatgtgtaAATTGGGTAATAAAGATGATGGGGTTAACCTTGCTAATTCCTCAGTGGTAAACACTGCTTTCACACAAACACTTGTACTTATGTTTAACATATATATGTTCTTTACTTGTTTTAACCAATAATCCAAGCAAATCAATTAATAAAGGTTAAATTTGtgctacatttatattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36304 lncRNA upstream 14854 48634444 ~ 48634842 (+) True G27008
TU36266 lncRNA upstream 82402 48562604 ~ 48567294 (+) True G26996
TU36263 lncRNA upstream 96539 48552849 ~ 48553157 (+) True G26994
TU36262 lncRNA upstream 97029 48552233 ~ 48552667 (+) True G26993
TU36251 lncRNA upstream 199240 48418832 ~ 48450456 (+) True G26982
TU36298 lncRNA downstream 9978 48664655 ~ 48668517 (+) True LOC111188407
XR_002648485.1 lncRNA downstream 10207 48664884 ~ 48668564 (+) False LOC111188407
TU36382 lncRNA downstream 68654 48723331 ~ 48735530 (+) True G27072
TU36411 lncRNA downstream 110812 48765489 ~ 48765945 (+) True G27099
TU36446 lncRNA downstream 199835 48854512 ~ 48874216 (+) False G27130
XM_022678336.1 mRNA upstream 27784 48620730 ~ 48621912 (+) True LOC111194359
XM_022678326.1 mRNA upstream 31621 48578803 ~ 48618075 (+) True LOC103035773
XM_022662058.1 mRNA upstream 84095 48541535 ~ 48565601 (+) True amd1
XM_007255378.3 mRNA upstream 338156 48232270 ~ 48311540 (+) False cep85l
XM_007254902.2 mRNA downstream 17410 48672087 ~ 48679878 (+) True LOC103035149
XM_007254901.3 mRNA downstream 35447 48690124 ~ 48694492 (+) True LOC103034613
XM_022662098.1 mRNA downstream 44936 48699613 ~ 48707949 (+) True LOC103042815
XM_007254899.2 mRNA downstream 56896 48711573 ~ 48722910 (+) True ginm1
XM_007254912.2 mRNA downstream 229325 48884002 ~ 48895979 (+) True casp8ap2
TU36265 other upstream 7791 48555797 ~ 48641905 (+) False G26995
TU36292 other upstream 44791 48590949 ~ 48604905 (+) False LOC103035773
TU36264 other upstream 90956 48555797 ~ 48558740 (+) True G26995
TU36151 other upstream 366822 48278267 ~ 48282874 (+) True G26915
TU36153 other upstream 366822 48280765 ~ 48282874 (+) False G26915
TU36385 other downstream 86537 48741214 ~ 48742439 (+) True G27075
XR_002649725.1 other downstream 666744 49321421 ~ 49333922 (+) True LOC111191919
TU36609 other downstream 793168 49447845 ~ 49448221 (+) True G27238
TU36697 other downstream 1685033 50339710 ~ 50340077 (+) False moxd1
TU36768 other downstream 2090230 50744907 ~ 50749937 (+) False nup43

Expression Profile