RNA id: XM_022662051.1


Basic Information

Item Value
RNA id XM_022662051.1
length 2134
RNA type mRNA
GC content 0.44
exon number 8
gene id slc35f1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48325885 ~ 48446366 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctcAGAGCTCCTCCTCACTCTGGCTATGGGCCAGGTCCTGTCGCTGCTCATCTGCGGGATTGGCCTGACCAGCAAGTACTTGGCTACTGATTACCATGCCAACACTCCAGTGTTCCAGAGCTTTCTCAACTACATCCTGCTGTTCCTGGTCTACACCACAACACTCGCAGTACGACAAGgAGAGGAAAACTTGCTGGCAATCTTGAAAAGACGATGGTGGAAGTACATGATCTTGGGCCTGATTGATATTGAGGCCAACTACCTGGTCATTAAAGCCTACCAGTACACCACTCTTACCAGTGTGCAGCTGCTGGACTGCTTCGTCATCCCTGTGGTTCTGCTGCTGTCCTGGTTCTTCTTGTTAGTGAGGTATAAGGTGGTGCACTTTGTGGGTGTGGGCATGTGCCTGCTGGGCATGGGCTGCATGGTGGGAGCTGACGTGCTGGTAGGAAGACAGCAGGGCTTGGGAGACCATAAGTTGCTGGGGGACCTGCTGGTTCTGGCCGGTGCTACGCTGTACGGCATCTCTAACGTGTGTGAGGAATTCATTGTGAAGAACTTGAGCCGTGTCGAGTTTCTGGGCATGATGGGCCTCTTCGGCTCCTTCTTCAGCGGCATCCAGCTAGCAATCATGGAGCACAAGGAGCTGCTGAAGGTGCAGTGGGACTGGCAAATAGGACTCCTGTACATCGGCTTCAGCGCCTGCATGTTTGGACTCTACAGCTTCATGCCTGTGGTCATCAAAAGGACGAGCGCAACTGCGGTGAACCTCTCCCTGCTGACCGCTGATCTCTACAGCCTCTTCTGTGGCCTGTTCCTGTTCCAGTACAAGTTTTCAGGGCTCTACCTGCTGTCCTTCTTCATCATTTTTCTCGGGCTGGTGCTCTACTCCTCATCTTCTACCTACGTGGCGCAGGATCCCCGGGTGTACAAACAGTTCCGTAACGCAGGAAATGCGGTACCAGACACGCCGAATGTGGGGCCCCTGGAGCCTTCAGTTACCTACAGCAGCCTCGGCCAGGAGATTGAGGACGAGCCTCGCATTCGAGTAGCCTGAAAGGGTGGAGCTTTACAGATTCAATCGTCCACTGCCCCTCACACAGTCTGTAGAATGTGAATGATGATTATCACTGAATGATGTATATAACCACGTAGCAAACAATTACACTGTGATCACAAACTGTGAATAGGTAGCAGTGATCAATGACTTTCTCAAACCCCTGTATAGACATGATGCCACCTCGTCTCCCCCTCCCCCAGCAACAGTTTAGGTGTTTAGAAGGATTTGTGCTGACTGTTCGTGCAAATGCGCCATTgtgattcttttattttcttatatgaGCACAAGAGGTTCAATGTATTTGAgatttttacatgtattttctTGCTACTCTCATTAATATTTTATGCCTCTGAGTTAATTCTCTCAATCTCTGTCTCCTGGACAACTGCAATTCTGACTTTTGATCAGTTACTTATTGATTTGCCAAGAGCCAGTGCCTTGCCATGTACAGCTATTGTTGTTTAAACAGTATAACTGATCACACCATATCTGATCACTTTGCCCCAAGTGTTGTCTGAGGACATCATTTTGTGAGAAAGTGCTGCATTCTGTGCTAAAACAAAAAGGATATTAACCATCCGAAGAACAAAcgtgaaacaaaacaaaataaaacaatgagtcTTTTTTATCTACTATGCTTAAACTATTCCACCAGTTGTCCCTGGTCGGTTATTCTTTTTTGAGTAGGCAAAGTTACTGATTGTCTTAgactgtatttgtttgtttttaatacatGAAAGTATATGacacttttgtttgtttaatgatGAAATGTGTATTAGCGATTGATTATAAACTTGTACAAAAAAGCaatgagaagagagaaaaaaagacgcTTGTCTTTACAGAGttctgttttaatttgttttatggCTGATCATCAGCTGCACTGTAGTCCTAAGTATTATcacatttggaaaaaaaaatctctgtataaagttattttgaacagattctttaaaaaaatcatttgacttttttatttgcCATTTAAATATTGGAATTCTTAATGTGTCCGAGTTGTCgctttaaataaagtatctttGTCTTAAAGCTGAAAA

Function

GO: NA

KEGG:

id description
K15287 SLC35F1_2; solute carrier family 35, member F1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36209 lncRNA downstream 12069 48217506 ~ 48313816 (-) False LOC103039734
TU36222 lncRNA downstream 37149 48278262 ~ 48288736 (-) False pln
TU36223 lncRNA downstream 37149 48278262 ~ 48288736 (-) False pln
TU36224 lncRNA downstream 37149 48278262 ~ 48288736 (-) False pln
TU36218 lncRNA downstream 66193 48259382 ~ 48259692 (-) True G26953
TU36328 lncRNA upstream 105870 48552236 ~ 48552562 (-) True G27029
TU36329 lncRNA upstream 106466 48552832 ~ 48553160 (-) True G27030
TU36334 lncRNA upstream 139681 48586047 ~ 48632868 (-) True G27035
TU36336 lncRNA upstream 139681 48586047 ~ 48607805 (-) False G27035
TU36338 lncRNA upstream 161077 48607443 ~ 48694424 (-) False G27035
XM_007255373.3 mRNA downstream 1223 48313031 ~ 48324662 (-) True LOC103039734
XM_022662076.1 mRNA downstream 37175 48278268 ~ 48288710 (-) True pln
XM_022662065.1 mRNA downstream 37177 48278268 ~ 48288708 (-) False pln
XM_022662069.1 mRNA downstream 37177 48282483 ~ 48288708 (-) False pln
XM_007255385.2 mRNA downstream 1186567 47134735 ~ 47139318 (-) True hsdl1
XM_007254909.2 mRNA upstream 116138 48562504 ~ 48576593 (-) True ppil4
XM_007254910.3 mRNA upstream 276634 48723000 ~ 48735370 (-) False katna1
XM_007254911.3 mRNA upstream 276634 48723000 ~ 48735113 (-) True katna1
XM_022662130.1 mRNA upstream 300534 48746900 ~ 48851645 (-) False mdn1
XM_022662119.1 mRNA upstream 300534 48746900 ~ 48851645 (-) True mdn1
TU35957 other downstream 1587149 46704347 ~ 46738736 (-) True G26754
TU35943 other downstream 1790132 46533695 ~ 46535753 (-) True fkbp3
TU35877 other downstream 1799889 46523648 ~ 46525996 (-) True G26695
TU35879 other downstream 1804642 46518871 ~ 46521243 (-) False G26695
XR_001518806.2 other downstream 1889960 46427417 ~ 46435925 (-) False naa30
TU36479 other upstream 440628 48886994 ~ 48891028 (-) True G27145
XR_002649726.1 other upstream 988546 49434912 ~ 49435653 (-) True LOC111191920
TU36629 other upstream 1192393 49638759 ~ 49639444 (-) True G27258
TU36630 other upstream 1192393 49638759 ~ 49639444 (-) False G27258
TU36802 other upstream 2035523 50481889 ~ 50531639 (-) True G27400

Expression Profile