RNA id: XM_022662247.1


Basic Information

Item Value
RNA id XM_022662247.1
length 6954
RNA type mRNA
GC content 0.52
exon number 56
gene id dnajc13
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51503220 ~ 51584097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcatgcgcagacgcaCACTCTGTGCGAAGAGCGAACATGGCGGCGTCCTGACTGTTTTTTTCCGTACTGAGGGAAGCGCAGTCGGGAAGGCTCGGCACCACAAGTTCGGTAGAAAGGACGGAATCGAGTCGCAGCTGATCCGGGCGGTTCAGGCCTTGCCAGAAGATGAATGTCCTCAAAGACAACAAAGACCTGGCCTGTTTCTACACAACCAAGCACTCCTGGAGGGGGAAGTACAAGCGGGTTTTCTCTGTTGGCACTCATGGCATCACCACATACAACCCCACCACATTAGAAGTTACAAACCAGTGGCCTTATGGGGATATCTGTGGCATCGCTCCGGTGGGAAAAGGCCAGGGCACCGAGTTTAACCTCACCTTCCGGAAGGGCAGCGGGAAGAAGTCCGAAACGCTCAAGTTTTCCACCGAACATCGCACAGAGCTGCTGACGGAAGCACTgAGATTCAGAACAGACTTCTCAGAGGGAAAGATAACTGGAAGACGTTATAATTGCTACAAGCATCACTGGAGTGACACACGGAGGACGGTGGGCTTAGAAGTGACGCCAGGAGGCATTGACCAAATCGACCCTCACACTAACCGGGTCATCTGTTCCTATGACTACCGCTCTGTTGAAGGCTTTGCTGAGGTGTCCGACTACCAAGGGGGCTTCTGCATCCTCTATGGAGGCTTCAGCAGGctgCACCTCTTTGCGTCGGAACACCGTGATGAGATTATCCGCAGTGCGATTGAACATGCTGGGAACTATATCGGGATCACACTGCGACTGCGGAAGGATCCCTTGACCTTCGAAGGCTTTGTCAGCGAGAGGCTGGGCAAATACGGTTCTGATGAGTGCATCACATCGCTTGCCGAGTTCGTTGTACAAAAGATCTCTCCACGCCATGCGGAGCCCGTAAAGAGGATACTGGCCCTCACAGAGACGTGTTTGGTGGAACGGGACCCTGCCTCATACAACATTGTCACCGTCAAGCCCTTCGAAGAGGTGTTCGCTCTGATCTGTGATGCAGAGAACCCTCAGGTATTCACTATCGAGTTCATCAGGGGACAGATAAGAAAGTACTGCTCTACAGAGAgggaCTCTCTGATGGCGAGTCTGTTGGATGGTGTGAGGGCGTCCGGTAACAGGGACGTGTGTGTAAAGATGGCCCCCACCCAAAGAGGGCAGCGCTGGGGACTCCTCAGCATGCCTGTAGATGAAGAGGTGGAGAGCCTCCATCTCCGATTCCTTGCTGCTCCACCCAATGGAATTTTTGCCGACGCAGTGTTCAGATTCAATGCTAACATCTCCTACAGTGGAGTTCTCCATGCTGTCACTCAGGACGGCCTTTTTTCAGAGAACAAAGAGAAACTGATCAACAATGCCATCTTGGCCTTACTTTCCCAAGATGCGGAGCTGCCGGGGCCCAATGCTGAGCTGGAAGCTCAGTTCCAGGCTATTCGGCGCCTGGTCGCCTCCAAAGCTGGCTTCCAGGCCTTCACTCAGCTCCCCAAgttcaGGGAGAAACTGGGTGTGAAGACTGTAAAAGCACTGAAGAGGAACAATAACGGAGTAACACATGCTGCTATAGACATGCTCTGTGCTCTTATGTGTCCAATGCACGATGACTACGACCTGAGACAGGAGCAGCTGAACAAGGCTTCACTGCTTTCCTCCAAGAAGTTCCTGGAGAACCTTCTGGAAAAATTCATCAGCAACGTGgAGCACGGCACAGGTGCTTTAGTCATCAGTGCTCTTCTGGACTTCTTGACGTTTGCTCTCTGCGCTCCCTACAGTGAAACAACCGAAGGTCAGCAGTTCGACATGCTGCTGGAGATGGTGGCCTCCAATGGAAGGACACTCTTTAAACTCTTTCAGCATCCCTCCATGGCTATAGTTAAGGGTGCAGGCCTTGTAATGAAGGCCATAATTGAGGAAGGTGATAAGGAAATAGCCACCAAGATGCAGGATTTGGCGCTGAGTGAAGGAGCTTTACCCAGACATCTCCACACCTCAATGTTCACCGTTAGCGCTGACCAGAGGATGCTTACCAACagACAGCTAAGTCGGCACCTTGTGGGTTTGTGGATAGCAGAAAATCCTGTCGCTATGAACCTCCTCAAGAGAATCCTGCCGACTGGCCTCCTGGCATATCTGGACAGTTCTGATGCAGTTCCAGAGAAAGATGTGGACAGGATGCACATCCGCGACAACCTGAAAATCGCCACAGACCAGTTTGGGCGGAATAAGGTACCTGAGTGGCAGCGGATAGCAGGGAAGGCTGCAAAGGAGGTGGAGAAGTTTGCCAAAGAGAAGGCTGACCTGGTGCTCATGCACTGGAGGGATAAGATGGGCATTGCACAGAAGGAGCAGGACAGGAATAACCTGAACCCAAACCAAAAACCGGTCATCCTGAGGAAGAGAAGACAGAGGATTAAGATCGAGGCCAACTGGGAGCTCTTCTACTACAAGTTTCAGTTGGATCATGCTCGTTCTAATCTCATCTGGAACCTAAAGACTCGGGAGGAGCTGCGGGATGCTCTGGAGGGAGAGATGCGCTCGTTCAGTGTGGACAGAGAGCTCGGAAGTGCCAACGTCATCTCCTGGAATCACCAAGAATTTGAGGTGAAGTACGAGTGCCTTTCAGATGAGATTAAGATCGGGGATTATTATCTGCgcctgctgctggaggaggatgAGAATGACGAGTCTGGAGCCATCAAGAGATCGTATGAGTTTTTTAACGAGCTCTACCACCGGTTCCTACTAACACCCAAGGTAGCGATGAAGTGCTTGTGTCTGCAGGCCCTGACGATAGTGTATGGGAAGTGCTGCGAGGAGATCGGCCCTTTCACAGACACCAAATACATTGTGGGAATGCTGGACAGGTGTACAGACAAACTGGAAAGAGACCGGCTCATCCTTTTCCTCAACAAACTCATTCTAAACAAGaaaaatgtaaaagagataATGGACTCAAATGGCGTCCGCATCCTAGTGGATCTGCTTACATTAGCCCACCTCCACACCAGCAGAGCTACTGTTCCCCTACAGAGTAACGTGATCGAGGCAGCTCCAGACATgaagcgagagagtgagaaagagtggtACTTTGGAAACGCTGATAAGGAGAGGAGAGGACCTTTCAGTTTTGAGGAGATGCAGGAGTTTTGGAGCTCAGGGACCCTGACTGCAAAGACGCGTTGCTGGGCTCAGGGCATGGATGGTTGGCGCCCTCTGCAGGCCATCCCACAGCTGAAGTGGTGTCTGTTGGCCAGTGGGCAGGCGGTGATGAATGAGACAGACCTGGCCACACTTATCCTGAATATGCTCATCACCATGTGTTCCTACTTCCCAAGCAGgGACCAGGACAATGCGATCATCAGACCCTTACCCAAAGTGAAGAGGCTAATCAGTGACAACACCTCCCTACCCCACATTGTCCAGCTGCTGCTGACCTTTGACCCCATCCTGGTGGAGAAGGTGGCAAACCTGTTATACCTGGTGATGCAGGACAACCCCAACCTGCAGCGTCTCTACCTCACTGGAGTCTTCTTCTTCATCATGATGTACACAGGATCCAACGTGCTCCCAGTAGCAAGgtttttgaAGTACACTCACTTGAAGCAGGCCTTTAAATCAGAGGAGgcTAAAGGTCAGGATATTGTACAGAGGAGTGTGCTGGGGCCGGTATTGCCGGAGGCGATGGTGTGTTACCTGGAGAACTATGAGGCCGAGCGCTTCTCTGAAATCTTCCTGGGAGAGTTTGACACTCCTGAGGCCATCTGGAGCAGTGAGATGAGGCGAATGATGATAGAGAAGATAGCCGCTCACTTGGCAGACTTCACTCCTCGGCTGCAGAGTAACACTCGAGCTCTTTATCAGTACTGCCCCATTCCTGTGGTCAGCTTCCCTCAGCTGGACAGTGAGCTCTTCTGCAACATCTACTACCTCCGCCACCTCTGTGACTCCAACCGCTTCCCCAACTGGCCTATCCGAGATCCTGTTAAACTGTTGAAAGACACCCTGGAGGCCTGGAAGAGGGAGGTGGAGAAAAAGCCTCCTTCCATGTCTGTTGATGATGCTTACGAAGTGCTGAACCTTCCTATCGGACAGGGCCAGCATGAGGAGAGTAAAATTAGGAAAGCGTATTTCAGACTGGCTCAGAAATACCATCCAGACAAGAACCCAGAGGGCAGGGACATGTTTGAAAAGGTAAACAAGGCGTATGAGTTCCTGTGCACTAAATCAGCACGGATTGTGGATGGGCCGGACCCTGAAAACATCATCCTCATCCTTAAGACCCAGAGCATCCTCTTCAACCGACACAGACAAGAACTGGAGCCATATAAGTATGCCGGCTACCCCATGCTGATTAAAACCATCACCATGGAGACGGGGGACGAGCAGCTCTTCTCCAAAACGTCTCCTCTGCTGCCGGCGGCGTCTGAGCTGGCCTTTCACACGGTCAACTGCTCCGCCCTCAACGCAGAGGAACTGCGGCGGGAGAGCGGCATCGAGGTGCTGCTAGAGGCATTGTCACGCTGTGTAGCTGTTCTCACAGCCTCCAGCAAACCAGAGGATATGGCAGTACAGGTGTGCGGGCACATCTGTAAGTGCTACAGCGTAGCGGCTCAGTTTGAGGAGTGCAGAGAGAAGATCATCGAGCTTCCAAACATCATACGAGATGTTTGTCACATTCTCTACTATGGAAAGGTTCTTCCACGCCTGTGCTCCCTGTCTGTGCAGTGTGTTAGCTCCTTCGCCGTGGATTTCTTCCTTCAGACCCACCTTTACCACGCTGGAGTCCTCTGGCACTTACTGGTCAACCTCTTCAACTACGACTACACGCTGGAGGAGAGCGGCGTGCAGACCAGCCAAGAGACCAACCAGCAGGAGGTGGCCAACAGCCTGGCCAAGCTGAGCCTGGTGGCGCTGGGTCGTCTCGGGGGCTACAGCTGCACGGCCAGCACTCCAGAGGAGGGGTCTGTACCTGAGACGAATGGAGGAGAGACTGTGGGACCTCCTCCAGAGAACCCCACCGTCAGGAAGAGTCTGGCAGCCATGCTGACTCCATATGTGGCACGCAAGCTCGGTACCAGTACTCCAGCAGAGGTTTTGAAGTTGTTGAACAGCAACTCGGAGAACCCGTATCTTATCTGGAACAATGGAACCAGGGCTGAGCTTCTTGAGTTTCTGGAGGCACAACAAGAAAGCAATGTTAAAAGGGGTGAATGTGACAAAAGCTTTGGTGCGgagtttgtgtttagtgagcATGGCAAAGAGCTGATCGTAGGGGAGATTTTCGTCCGTGTTTACAATGAGCAGCCTGCTTTTCCTCTGGAGTATCCCAAGGCCTTTGCAGCGAGTCTTCTGGACTATGTGGGCTCTCAGGCTCAGTACCTGCACACACTGCTGGCCATGACCCAGACTAATAAAGTGGAGTCTCAGCAGCATGCTCAGAGACTGCGGTGGGCTGAGATGGCCCTGGAGGCCCTGCGCAACGTCATCAAAAACAACCCAGGCTCTGAGACGGAGTGTATCAACCACTTCAAACTGCTGTTTTCCTTACTTAGAGTCCATGGAGCTGGAAAGGTCCAACAGCTAGCCCtggagGTTGTGAACACGGTCACATCCAACCAGGAATGCGTCAGTAACATCGCAGAGTCTCTGGTGCTGGCTaacctgctggtgctgctgcacTCCTTACCTTCCAGCAGGCAGCTCGTTCTGGAGACTCTGTATGCACTTACTTCCAACACCAAGATTGTAAAAGAAGCAATGGCCAAAGGAGCACTGATCTACTTGTTAGATTTGTTCTGTAACTCCACTCACCCTCAAGTGCGCTCTCAGACTGCCGAGCTCTTCTCAAAGATGACCTCAGACAAGCTGGTTGGCCCCAAGGTGCGTTTGACTCTGATGCGTTTCCTGCCGGGTGTGTTCATGGATGCCATGCGAGACAATGCAGAGGCAGCTGTGCACATCTTTGAGGGAACTCATGAAAACCCGGAGCTAATCTGGAATGATGCCTCACGAGAGACTGTTTCCACCACCGTCAGAGAGATGATGCTTGATCACTTCAAGCAGCAGAAAGACAATCCTGATGTAAACTGGAAGatGCCGGAAGACTTCACAGTTCCGTATGCAGCTGGGCAGGGTGAGCTGGAAGTTGGTGGTGTGTTCCTGAGGATTTTCATCGCTCAGCCTGGCTGGGTGCTTCGCAAACCTCGGGAGTTCCTCGTCTCATTGCTCGAGACCCTCACTGAACTACTGGAGAAAAACAACCCTAATGGGGAGGCACTGGAGACTGTCACCACAGcagctgtgtgtttgttcagTACTCAGACTCAGCTTGCGGACCAGGTTCCTCCTCTGGGTCATCTGCCCCGCATCCTGGCAGCTCTCAACCACAAGAACAACGCCATACCCAAAAGTTCCATCAGGCTCATCCACGTTCTCTCAGATAACGAGttgTGTGTGCGATCCATGGCTGCACTGGAGACCATTGGGCCATTGATGACTGGGATGAAGGTCAGGGCTGATATGGCAGGACTGGCCTGTGAGGCCCTCAATCGCATGTTCCAGCGAGAGCAGTCCGACCTGGTTGCACAGGCTCTCAGGGTAGAGCTGGTGCCATACTTGTTGAAGCTTTTAGAAGGAGTGGGGTTGGAGACTCTGGATAACCCCTCAGCAACCAAAGCTCAAATCGTCAAAGCTCTTAAATCCATGACTCGCAGCCTACAGTATGGAGAACAGGTGAATGAAATCCTGTCTCGTTCCACTGTGTGGAGTGCCTTCAAAGATCAGAAACACGATCTCTTCATCTCAGAGTCGCAGACTGCAGGATACCTGACAGgccCGGGAATAGCAGGTTATCTAACCGCAGGCACGAGTGCTACGGTTATGCCCAGCGTTCCGCCACCCGTAGACAATGACATCGGAGACCTGGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36927 lncRNA upstream 275590 51227422 ~ 51227631 (+) True G27495
TU36926 lncRNA upstream 275891 51227092 ~ 51227330 (+) True G27494
TU36922 lncRNA upstream 314891 51187863 ~ 51188330 (+) True G27491
TU36911 lncRNA upstream 335657 51162625 ~ 51167564 (+) True G27481
TU36889 lncRNA upstream 529977 50972937 ~ 50973244 (+) True G27463
TU37080 lncRNA downstream 425001 52007914 ~ 52008225 (+) True G27633
TU37090 lncRNA downstream 505418 52088331 ~ 52090633 (+) False dsel
TU37091 lncRNA downstream 507940 52090853 ~ 52092447 (+) True G27643
TU37112 lncRNA downstream 600466 52183379 ~ 52183744 (+) True G27662
TU37115 lncRNA downstream 620972 52203885 ~ 52204371 (+) True G27664
XM_022662454.1 mRNA upstream 281148 51192823 ~ 51222073 (+) True rngtt
XM_007255209.3 mRNA upstream 357826 51084068 ~ 51145395 (+) True gabrr1
XM_022662373.1 mRNA upstream 472429 50980515 ~ 51030792 (+) True LOC103030377
XM_022662442.1 mRNA upstream 530557 50896361 ~ 50972664 (+) True ube2j1
XM_007255207.3 mRNA upstream 731059 50769863 ~ 50772162 (+) True lyrm2
XM_022662389.1 mRNA downstream 3294 51586207 ~ 51695017 (+) True tmx3
XM_007258974.3 mRNA downstream 500369 52083282 ~ 52088665 (+) True dsel
XM_007252930.2 mRNA downstream 739079 52321992 ~ 52327802 (+) True LOC103029411
XM_007252931.3 mRNA downstream 784970 52367883 ~ 52374147 (+) True psmc6
XM_022678348.1 mRNA downstream 800032 52382945 ~ 52400818 (+) True ddhd1
TU36920 other upstream 324847 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 731060 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 753284 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 1163144 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 2055000 49447845 ~ 49448221 (+) True G27238
TU37134 other downstream 731112 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 871518 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 885859 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 1177200 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 2039910 53622823 ~ 53622894 (+) True trnah-gug

Expression Profile