RNA id: XM_022662303.1


Basic Information

Item Value
RNA id XM_022662303.1
length 5001
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC111188512
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52484734 ~ 52490887 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGTTTACACTGAAATCCTATTGGGACCTTCAGGCGGAACTCTTCACCCAGTCGCTGTTTCCACCGGGCGGAGTGGACGGACAGAAGTGGTGTGTTTTTAGCGATGGGGTGTTTTtcgagaaaaaagggaaaattcGGATCAAATTGCAGCTTGTTTTAAACCAGTTCAACACAGGATGCACGCTCACAACGCGatgaaAGCTCAAAACAAGACTCTAGCACTGGAAAGAAATATTTGATTCTGAGCACAATGCATGACCTGAACAGCATGGCGCTGCAGTGTTCAGTTTGCCTAAAAAAGTTTGATTTTTATTCAAAACTACGGCGCCATCAACTGACCCATTCTGGACAGAGACCCTTTACATGTTCTATTTGCAACAAAGGCTTCCGTCAGACTGCCCATTTGAAGAGACATCTGGAGAGCCACGCAAAGCCGAGACCTAACTGGGTCTTGGGTGCAGCTGATTCCGAGTTACAATACAAGAACACAGAGGAGAGCAGTACTGTACCTCATGCGAGAGCTCAGCCAAGTATTTTGGAGCAAACTGAGATGCCGTCTGCTTCTGAGTTGGTTAATCACAGTGTGTGGTACAATGCCCTGCAGACACAAAATGAAAGTGAATGGAAATATGTTGAGGACGATTGCACAAAGGAGCAGGAACTGGTTGAGAATTCAATGAGAAATAGTGCAGACTCTTTTATAGTAACCAACTCTTTACAGGAGCAAAACCACACTGAGGACTATGTTGCTAAAAAACAGACATGTGACACTGTACATTGGAATTACAGTGGATTTGCCGAAAAAGAAAATGACTGTCAAAATGAACAGTACTCAGAATGCAGAATGCTCAAACCTGAGCCTGAGACAAGTCTAGAAAAGCAAGAACAATTAGGGTTATATGATAGTCGTGAGGATTTACAAACGGACATTGGGATATCAGACAGCTCTTACTCAGGTATTGCTCAAGTATCACTGGAAACCATGGAGAAAACGCCAAAGCAGCACCAGTGTGCCACTTGCTTAAAGTGCTTTAATGCTCCCTCTAAACTTCGCAGGCACGTTTTAATTCATACCAGCGAGAGGCCTTTTGGCTGCCAACTTTGCAGCAAGGCTTTTCGCCAGCTTGCGCACTTGAAAATTCACTTGACCACTCattttacacagagaaagaatAGGGCAAAATTCAAACCGCTAAATGTTTCCAGTGGGAAAGCCCCTCAGAGCCGTGGTCACCAGCTCAATTCCAGCGTAAAAATAAGTGCCTGCTCCTCCATGCCTTTGGCAGGAGAGACAGGAGAAAAAATACCCTTCCAAGAAACCTTTGTCACTAAGAAATCAGAGGAAAACTGCATTAGAGGAGAGTTATTACCTAAAGATAGTGTCACAGTGAAGTTGAATAGTGAATCCTTAATGAGAGGTAAAGTAATGCATGAATGCCCAGTGTGCTTCAAATGTTTCAGTGCTCCATCCAAGCTAAGAAGGCATTGCCTTATTCACACAGGCCAGAGACCCTTTCAGTGTTCTTTATGCTACCGATCTTTTAGACAGTTGTCTCATCTGAAAGCACATTACAGCGTTCACACTGCTCCTAGGAAAAAAAGGACTTTGCCGCTTCAGCTTCACAAAGCGGGCAATCAGCCTCATTCCTCAAAGACCAGGCTAAGACGCTTTGTGAGCAGCCTTAACAGGAAATTCAGATCAGTAAATCACCAACAGAAACAAGTCAGCTTGAAGGAGAACATTTTGAGTAGTAAGTCTGCAAGTTTATCTTGTACTATAGGTTGTAAAACTACAGACGCGAACGACAATGTTTGGGAAAGTGATGTACTTAAATACTCAGAAAACAAAGACTGTAGTACTAGTAGACAAGGTTATTGGTGTACAGTGTGTTCAAAATCCTTCAATGCCCCTTCCAAACTCAGGCGACACCTTCTGATCCACACAGGGCAAAGACCTTTCAAGTGCCTAGTATGTTTTAAAGCTTTCACACAGAGATCCCACTTAAAGGTTCATAGATGTAGAAGGCAAAGCAAAGGAGCAGGTAAATCTACCTTAAGTGAGGTTCAGCTGTTGGAGAAATTGGACAAACATAGCCCAACTCCCAATGTTCTCGAGATTACAGATGATCCTGTAAATAGTCAACAGCCTACAACATGTAATAACACAGTGACAGACAGCACAGATAGCTTTATACCCTCAAACAACATCTTGAAATCATCATCAGTGTATATCGAAGACAATAGCCAGCTCACTTCTCTTCCAAATGCAAACATACCCAGTGAAAGCATGACCAATTCTACCTTTGAAGGCGTCACGGACAcgacaaaccaaaccaaagagTGTGGACATCAGTGCACAATATGCTTGAAAATCTTCGACTTCCCATCCAAACTCTCCAGGCATCTGCTGATTCACATGGACATCAGGCCTTTCACGTGTGCTGTGTGCAGTAAGTCTTTCAGACAACTCAGCCATTTGCAGAGCCATGAGAAGGTTCATAcactgaaaagaaaaatgatGTATAAAGGGAGTCACAAACGCAGGATTGTTGCACCAAAGACTGCACCTGCTTCTGAGACATCAAAGACTTTTGAGGCATCTAAGATTTCTTTAAATAAGAAGAATACCAGCAATCAAGACTCTGAAAACATTCCATCGCTGCAGAAACCAGACCCTGACTGTGTTTTGGTTGAAAGCAATGAAAATCCAGAAAGCCTGcaaatgaatacatttaataatgtatCTCCACCCTCTTGTTCCTGGTCTGCAGAAGAGTTATCATCTGTGAAAAGCACAACAGATGCAGACTGCACCAACCTCCAAAATGAAGCCATGCCTGGAAATGTGTTAGCTAATAATGCTTCCCCCCTTAAGAAGCGAAACCCAAATCAgtgcaccttctgtctgaagaCCTTTGATTTCCCATCAAAGCTTTCCCGACACCTGCGGATCCATACAGGCCTCAGACCTTACGAGTGTCATGTCTGTCACAAGTCATTCAAGCAACTAAGTCATCTGCAGTGTCACCAATGGGTCCACAACAGAGCCTGCAAAAAAGTTATAGTCTCGGACAATCTGCTGACACATCAGGAGCCAACCTCACCTGGTTGGGGAACCATGTCAGGAAAAGAACCTCATCAAGAGAGACCTGAAGGATTTACCCTGGTACACCATGGGCAGAATGCTTACACAGACCAAGAACCCCCTGTGATCTGGAATCCTGGAGAATATGTAAGTGCTGAATGCAGTTCTTCCAGTTCAGATCATAAAGAGAGTAAGGTCAAGTCTGAAGTTGACCCACAGGTGGACAGGCTAAAGCTTGAAACGGGTACCTCTGTAATCGGTGCTGATGGGGTATCCAGAAGACTGGATTGGTATTGTCCAGATCAAGTGGAGCTGAGCAAAACAAGTGACCTCAGTCAATCTGAGGAAAGACCAGAGACCAAGAATACTCAGGACATCCACTATTGTGTTCCTGAGGACTGTTCCAACAGATCTCCAACTGTGTCGGATTGTTGTAGGCTTGGCTTCAGTTATGAACAGCAGGAACCCACAGTGTTCAGAGGGCCTAAGAACGAAGCTGCTGAGGAAGACTACGAGACAAACTTCACCGAACCCCCAAATGACCTTCCTATATGCCCGGCCTGCAGCCAGTGCTTTCCTACATTAAAGAAACTGCATGCGCACAAATGCCCACTGCAGGCTCCTGAAGATAGACTGCGGAAGTCCTATCAGTGTGCTGTTTGCTTCAAGAGCTTTGAAGCTCCATCTAAGCTGAAAAGACACTACTTGATCCACACAGGCCAGAGACCTTACCAGTGCACAATGTGTAACAAAGCGTATACTCAGTCAGCTCATCTAAAAACACACATGTTCTCCCATAGATAGACACTAAATCCAACACTCTGCAGTACAAGCCTGCTGTTCTTTGGGCTGTGTGCATGGGCAGTTTAGTGGATCTGGGCTATGGATTATGTACAGAATATTATGGGAACTATGGGACAACAGGAACAGTTATTGTACAGTTTTATGTCTGAATGATCTGTTAACCTATTAAAATTGActgattcattgttttttttgttcggTTTGTAAAGGAATAATTAACATATTATAAACATGTTACATGTTGCTGTTGAACAAACAATGTTGCCTTTTTTacttaatataatgtaatctaactttttaatttactgtaaagactgtaaatagactttttttatttttccctgcTTTTGGAGGTACCTTTTAACAGACATTAGCTCCCACCACTAATCAATCCTTCCCGATTCACCTAATTACTGCCACCAGGAGAGCCTGATCATTTGAATGGAGTATTTTTAGATGTgggataaaaatgtaaaacctgCAGGACACTAtgggtgtgtcccaattgcatACTAATCACTACCTGTTTTGAAGTATGTAAAGTAGATAAGTGTACGAGTCCATTGTTTTTTGAGAGTGGAAAAAATTGTCACtattatcccacaatgcaatgctTAATGAAAAGGGAAGAGCTACTTATATTCGAAGCAATATGAGAAAAAAAGGGTGGATAACAATGTAAGTGCAGCAACAGCAACTGGAGAACTTGCAGTGATGTGTTGGTATTGCTTCATCTTAATATAAAATggtttattacattaatatttgcTGTAAAAACCTACCAATCTCACacaatgtaaattaatatttaatatatatatgataaaagAGCTGGGCATTATATTTTCCATATCCAGGCCTTCACATATACACCACAGAAATTGAACTGAACTTTACTGCACTTGTTAAGGTCCAAACCAGACTACAGTTCTCTGACTGAACAAgaaaaaagtactgaataaaattaaatggggtaattaaactacatttaaatagcaatattaCTTTGAATAAATTGAAATGAATGCTGTTTTACTTCAAATACATGAACATTTTGTTCAATTGTCAGTTGTTTATGTGAATGTTGATTAAATATCGAAAATCTTTTTTAA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37233 lncRNA downstream 5196 52479262 ~ 52479538 (-) True G27755
TU37214 lncRNA downstream 83538 52365841 ~ 52401196 (-) True G27738
TU37142 lncRNA downstream 175967 52308348 ~ 52308767 (-) True G27690
TU37141 lncRNA downstream 180757 52303601 ~ 52303977 (-) True G27689
TU37138 lncRNA downstream 188784 52293918 ~ 52295950 (-) False LOC103040973
TU37284 lncRNA upstream 229774 52720661 ~ 52779893 (-) False G27798
TU37283 lncRNA upstream 287644 52778531 ~ 52779893 (-) True G27798
TU37298 lncRNA upstream 291138 52782025 ~ 52782480 (-) True G27808
TU37325 lncRNA upstream 295585 52786472 ~ 52812630 (-) False G27821
TU37337 lncRNA upstream 306678 52797565 ~ 52816766 (-) True G27822
XM_007252937.3 mRNA downstream 28587 52451303 ~ 52456147 (-) True LOC103031734
XM_007252936.3 mRNA downstream 38927 52438457 ~ 52445807 (-) True LOC103031417
XM_022662441.1 mRNA downstream 101785 52374516 ~ 52382949 (-) True cgrrf1
XM_007252933.3 mRNA downstream 102204 52374516 ~ 52382530 (-) False cgrrf1
XM_022662320.1 mRNA downstream 162814 52293880 ~ 52321920 (-) False LOC103040973
XM_015606810.2 mRNA upstream 34881 52525768 ~ 52554272 (-) True LOC103032373
XM_007252939.3 mRNA upstream 34881 52525768 ~ 52554247 (-) False LOC103032373
XM_022668102.1 mRNA upstream 149408 52640295 ~ 52641584 (-) True LOC103041285
XM_015606803.2 mRNA upstream 179224 52670111 ~ 52717067 (-) True LOC107197707
XM_022662540.1 mRNA upstream 269166 52760053 ~ 52765844 (-) True glrx5
XR_001518286.2 other downstream 1744300 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 1945062 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 1945062 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 1945062 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 1953095 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 295585 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 295585 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 1131389 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1559874 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 2066059 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile