RNA id: XM_022662373.1


Basic Information

Item Value
RNA id XM_022662373.1
length 2876
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC103030377
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50980515 ~ 51030792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcctcctcctcctcaccgcTCTCAGCGCGCGCGATGCGGGTCTCCGCGCGCGGCCCTCCGTACCATGCACAGAGCGCCTGAGCGCGCCGCCCTCGCCCCGCCGCCGCGTGGACTCCTGACCCGGGCTCCGACATGCCTTACTCCGCCAAACTGCTGCTCCTCATCCTCTGCCTCAGCGCGCTCGCGGAGGGGGGCAAACACAAGAGCAGGAAGCGGAGGTGGTCTGCGAACCTGGAGGCTCACAAGCACGGAACCCCACTGTCCAAAAAAGTGGTTGATGGAACCAAAACACGGAAGGTGAAAACGGACCACTTACTACGAGTAGAAGATCACGATTTTACTATGAGGCCAGCTTTTGCAGGCCCAGCAGTACCAGTAGGAGTGGATGTCCAGGTGGAAAGCTTGGACAGCATCTCAGAGGTGGACATGGACTTCACCATGACCCTGTATCTGAGGCACTACTGGAAGGACGAGCGGCTGTCCTTCCCCAGCACCACCAATAAGAGCATGACTTTTGATGGACGTCTGGTGAAGAAGATCTGGGTCCCTGATGTGTTCTTCGTCCACTCCAAGCGCTCCTTTATCCATGACACCACCACAGACAACATCATGCTCAGGGTTTATCCTGATGGTCATGTTCTATACAGTCTCAGGGTGACGGTGACGGCAGCATGTAACATGGACTTCAGCCGTTTCCCCCTCGACTCACAGACCTGCACACTAGAGCTGGAGAGCTACGCCTACACAGACGAGGATCTCATGCTTTACTGGAAGAGCGGTGATGAGTCTCTCAGCACAGACGAccgcatctctctctctcagttcctTATTCAGAAGTTTCACACAACCTCCAGATTGGCCTTCTACAGCAGCACAGGCTGGTACAACCGACTGTACATCAACTTCACTCTGCGGCGTCACATCTTCTTCTTCCTGCTGCAGACCTACTTCCCTGCTACTCTGATGGTCATGCTGTCCTGGGTGTCCTTCTGGATTGACCGCCGCGCCGTTCCTGCCAGGGTTTCCTTAGGCATCACCACGGTGCTCACCATGTCCACCATCATCACAGGAGTGAACGCCTCCATGCCCAGAGTTTCCTACATAAAAGCCGTGGACATTTACCTGTGGGTCAGTTTTGTCTTCGTCTTCCTCTCTGTCCTCGAGTATGCAGCTGTCAACTACCTGACAACAGTAAAGGACGGCAAAGACCGCAAACTCAGGGAGAAGGCAAGAGAACAGtccCTGCCCTGTACCTGTGGGCTCTCCCACGGCAGGACTATGATGCTGGACGGAACGTACAGTGAAGCTGACAGTAACAGCCTGGCGGGGTACACCCGCGCCCCCATGGCCACCGAGGAGCCCCCTGAGAAACAGGAGCGCATGGTGGTCCACCTGTCTCTAGACAATGAGTCCACAGGAACAAAAAAGAAAGGCCTGCGGGGCTTCCGCATCATCCAGAACACTCACGCCATAGACACTTACTCTCGCATGATCTTCCCCGGGGCCTACATCTTCTTCAACCTCATCTACTGGTCTGTGTACTGCTGAACCAGCCTCATAGCATGGAATACAGGCCAAGACAGTACAGGAAATCAGGCCATCCCTGTGCAATCAGAGCACTTTCAGCAGTAATTACTGGTGGAATCTGTAGACAGTTACGGTTTTGGTGTAAATGAACAAATTCAGCGAGAAGCCAGACTCTGCTGAGACCTCAGTGACTCATGCTATTCAGCTGGAAATATAATTGGGCTCTCGAATAACAGGATGTATTTTATCTTATGGAGGAGTGATGTAATATCTGGGGAACAATTTGACAAGGCAATATCAGTTTCAGTGCTCGGACCCCCGGCACTGCACCATAAAGTCTGATTGACACTATCACAAGAGACTTGGTAAAAGCTCAAATCTACCCAGCAGTTCTTTCTTTGCGTTAGAGGGCATGCACTGCTCGGTGGGATTTAATCAACTTCTTTCTCAGCTTGGCTCACTCTCCCCCTCATCTAAATTCCTGGCTGTGCTGACGTCACGCCTCCGCCATGgctgagctgtgtgtgtttgaactcTTTGAATTTGTGAATTCTGTGCTTTCTGCATTATCAGTTCTAGTCCTGCAACTAGCTGTTATTGCTTATTATGGCATTTCAGATCCCACACCAAACCATACACTTCAAAAAGGGGAACTCTTTTACATTTACCTCCATTCAAATGTACCAGCATTAATGCATGAGTCAAGGCAGGAATTTTATAAGGACAAGGACGATTTAATATCACTTTAATTTTAGCCAGTTACACTAATTTAATCCCATAATTTAGATGGCAGTATTATGCACTCACTTGTCCACATGCCTAAATACTTACCTTGTATttccactcagtggccactttatgagCTCCTCTTACCTTATAAGTGATGAAGTATGAAATGATACAATTATAAAATTACCAAGCTGTAGCCAATTTATTGCACTGTTTATCAGTCACCCTATACTTCTTTGACAGCTGATTAATTGACTACTGAGCTAATGTTAACCAGACAGTATTTGAGGGGTGGACCATTCTAAAATAGAGGATACCTGTATCTTAGTTTAAGTACttaactgagattaaaaaagtGATCATTAATAAAGGGCTAAAACATGATTAACACAAACAGTGCATTatcacttaaaggagaactccggtttaaaattgacttttggtgtagtaaaacataataaactgTACTAACCTgtagctttccgagatccagtaattGTGTGCTTTTTGTCCAGCACTCTTACTGACGGGTGCTTCCGGGCATAATTttccctgataaatcactttttacactgctatccaggcttaaagtagctccacacctcattggtagaatctta

Function

GO: NA

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36889 lncRNA upstream 7271 50972937 ~ 50973244 (+) True G27463
TU36757 lncRNA upstream 277394 50702371 ~ 50703121 (+) True G27370
TU36753 lncRNA upstream 277446 50702371 ~ 50703069 (+) False G27370
TU36751 lncRNA upstream 305019 50674557 ~ 50675496 (+) True G27369
TU36711 lncRNA upstream 430533 50546608 ~ 50549982 (+) True G27333
TU36911 lncRNA downstream 131833 51162625 ~ 51167564 (+) True G27481
TU36922 lncRNA downstream 157071 51187863 ~ 51188330 (+) True G27491
TU36926 lncRNA downstream 196300 51227092 ~ 51227330 (+) True G27494
TU36927 lncRNA downstream 196630 51227422 ~ 51227631 (+) True G27495
TU36999 lncRNA downstream 448534 51479326 ~ 51535896 (+) True G27563
XM_022662442.1 mRNA upstream 7851 50896361 ~ 50972664 (+) True ube2j1
XM_007255207.3 mRNA upstream 208353 50769863 ~ 50772162 (+) True lyrm2
XM_007255206.3 mRNA upstream 212276 50758025 ~ 50768239 (+) True lats1
XM_022662332.1 mRNA upstream 216427 50758025 ~ 50764088 (+) False lats1
XM_007255205.3 mRNA upstream 226554 50744883 ~ 50753961 (+) True nup43
XM_007255209.3 mRNA downstream 53276 51084068 ~ 51145395 (+) True gabrr1
XM_022662454.1 mRNA downstream 162031 51192823 ~ 51222073 (+) True rngtt
XM_022662257.1 mRNA downstream 472428 51503220 ~ 51582902 (+) False dnajc13
XM_022662237.1 mRNA downstream 472429 51503221 ~ 51584097 (+) True dnajc13
XM_022662242.1 mRNA downstream 472429 51503221 ~ 51584097 (+) False dnajc13
TU36770 other upstream 208354 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 230578 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 640438 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 1532294 49447845 ~ 49448221 (+) True G27238
XR_002649725.1 other upstream 1646593 49321421 ~ 49333922 (+) True LOC111191919
TU36920 other downstream 143696 51174488 ~ 51178374 (+) True G27489
TU37134 other downstream 1283233 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 1423639 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 1437980 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 1729321 52760113 ~ 52765175 (+) False LOC111188765

Expression Profile