RNA id: XM_022662384.1


Basic Information

Item Value
RNA id XM_022662384.1
length 1478
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC103045300
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51465284 ~ 51481876 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagAGCTAAAATCCAGATCATTACTGCATTGCTTCAGTTGAAATGCTGCTGACAGGAGGTTTGGCCTGCTTTGTCCTAGAGCTAAATTTCCCAAGCAGTAAAACCCTCCCTCCCTACTCTCCATTCCTTCATACAGACCTGCCCCAACTCTcaaccctctcacacacaccgtTCACTCTGCGTCTTTTCTGGAGTAGTGTGTTCACTAGTATGTTTACGTCAAGGATTTTGACTTTTTCTGGGTCATCTTGTGCTTGGGATATTGGATTATGTCATGCTGACATGACTGAAGCTACCACCGTTAGTAGAGGTCTGGGGTTTAGGCCGGGCCTGGTAAAGAGAACTGCTGCTGGTTCGAGGCTTGATATGGGACTAGCTGTAGCGGTTGGTTCATCACCAGCCACTTCCTTCATGAGTCACACTATCAGACTCAGAAGTGAAATGATGACCTCGTTACCTGGATCTACCTCAGGGCTTGATGATGGTGGCTTTGGTCTGTTCCGCTTTGAACCAATGGAAGAAATCAAATCCAGAGTGAGAGAATTGCAGGAGGAAAGCAAAGCTCTGGAGGCCAGACTGGCAGAGCTAACTGGAGGAGTGGATAGCACAGCTATGGAGACTGATGCTGTGGTGAACATAGAGGAACAACAGCAAGTCCAGGTCCAGGGGGAGTACTGTAAGGAGTTGGAGCATCTGGCTTTGGACACAATCAGACTTCACAGAATGCTAAACAACATTAGATCAACTGCACTTGAGCTAAAGGCCCAATATGATATTAAACAGGAATTTAGAGTGCTACTGGAAGCTGACATTGCTGCTATGAAGAAGGAAATTATGATGACTTCAAGATTGCAGTTGAATTTACAGACTAAGAAAGCAAGACTAAGGGATGAACTGTATTTCATTAACATAATCCAGCATGAGATGCAATACAGGCAGCATGACTTTTGGGGACCTCACGTGACTCTACTGGGGCCTACTGAAAGTGAGATCACAGCTTGCAAGATGAAACTGCAGGCCCTTCTCATACAGTTACACAACCTTACTGGCGTGAACCAAagtttaaacagaactctgGCAAGAACTCACTTTCAGGCAAACTATGTAATTTCACGATACCAGGCCCAGATTGCCATACTAGAAGCAGCCATTGAGGCAGCTAAAAGTGAACTTCAGGAACACATCATTACCCATAAAGAGGTGCAGGACTTGATGCAGGCTCTGGGTGCTGAAACTGCAACCTACTGGGCACTTTTGGATGGTGAGGAGCTAAGCGCCTCGATACAGATCAACCGCACTTCATCCTCAATGAACCTATCGGAGTCTGTGCCCGACTCTAACAGAACCTCCTCCCCTCTTAATACTGTCCAGACTGACATCGCTGCAGAGGCCCAACCTGAGGAAACAGAGAGcaTTACAGCCAACGAGTGACCGCAGTAAACAACATCAACAGagcatatcgtcgctgtccaatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36958 lncRNA downstream 280074 51184728 ~ 51185242 (-) True G27523
TU36936 lncRNA downstream 421109 51039630 ~ 51044207 (-) True G27504
TU36934 lncRNA downstream 434015 51029156 ~ 51031301 (-) True G27502
TU36887 lncRNA downstream 492660 50954618 ~ 50972656 (-) True G27461
TU36879 lncRNA downstream 579420 50885531 ~ 50885896 (-) True G27454
TU37063 lncRNA upstream 279048 51760924 ~ 51761490 (-) False G27619
TU37065 lncRNA upstream 279048 51760924 ~ 51761490 (-) True G27619
TU37067 lncRNA upstream 304186 51786062 ~ 51789157 (-) True G27621
TU37070 lncRNA upstream 361058 51842934 ~ 51844943 (-) True G27623
TU37073 lncRNA upstream 417671 51899547 ~ 51900123 (-) True G27626
XM_007258975.3 mRNA downstream 5233 51455657 ~ 51460083 (-) True LOC103038926
XM_022662267.1 mRNA downstream 43924 51245789 ~ 51421392 (-) True gli3
XM_007255210.3 mRNA downstream 286965 51174484 ~ 51178351 (-) True pnrc1
XM_022662505.1 mRNA downstream 290926 51149463 ~ 51174390 (-) True pm20d2
XM_015607358.2 mRNA downstream 656791 50779334 ~ 50808525 (-) False ankrd6
XM_007258977.3 mRNA upstream 2892 51484768 ~ 51495272 (-) False lztfl1
XM_007258976.3 mRNA upstream 2892 51484768 ~ 51495272 (-) True lztfl1
XM_022662440.1 mRNA upstream 783172 52265048 ~ 52272380 (-) True LOC103029105
XM_022662320.1 mRNA upstream 812004 52293880 ~ 52321920 (-) False LOC103040973
XM_022662323.1 mRNA upstream 812004 52293880 ~ 52321920 (-) True LOC103040973
XR_001518286.2 other downstream 724882 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 925644 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 925644 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 925644 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 933677 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 1304596 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 1304596 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 2140400 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 2568885 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 3075070 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile